| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0944 |
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| Symbol | |
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| ID | 5104374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 870431 |
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| End bp | 871729 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640506847 |
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| Product | nickel-dependent hydrogenase small subunit |
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| Protein accession | YP_001191040 |
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| Protein GI | 146303724 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
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| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTCTAA CAAGAAGGGA CTTCCTAAAA GTTTCGGGCG TGACAGCCCT AGGTACAAGT
CTAGCCCTAT CCGGCCTCTC ATACGAAGAA CTATTGTCTA AGGCTCAGGA AGCGGATCAA
CCAATAAACA TAGTATGGAC GGGTAATGGG TGGTGCGGAG GTAATACTAT AGCTTTCATA
GATGCAATGA ACCCATCAGT GGAGGATGTG GTAACAGGAG TGTACTTCAA CGGCAAGCCC
ATAACATTAA GGCAGCCAAG CATTCCGGAT CTGGGAATGA TAAACCTGGT TTATCACCCC
ATACTAATGC CTCAGGATAA CATGGCATAT GCAACCATGG AGATGGCATT AAATGGGGAG
TTAGATCCAT TCGTCCTGGT AGTCGAGGGG ACTATGTTTG ACGAATTCGG CGTTTACTAT
AAGAAGCCAA GTGGATCCTT CTGGTGTTCA GCGGGAAGGA AACCAGACGG AAGCGTTCTG
CTATGCGACG AGTTTGTCTT CAATCTTATG AAGAAAGCTG CGGCTGTAGT AGCAACTGGG
GCTTGCGCTA CTTATGGTGG AATTCCAGCT ACTACAAATG GGTTAGGGCA GAGAAGTCCC
ACATATGCCA TGGGAATGCT TGACGACCCG TACAGAGGGA TCTATGGCTT TCCATACTAT
GTTCACCAAG TTTATACACA GGATTTAGCA CCAGATATAA TCGACCAAGA CATATACTCA
GTCACGAATT CCCCAGTTAA CACTTCTTGG CCTGGGCCCA GCTATCACTG GCTTTCTACC
GCGGGTCTAC CAATAATTTC CATAGCTGCA GATCCTCCTG CCGGAGATTG GATTATGCGT
ACACTTGTCT CCGCAGTGCT TTATCTGAGA GGTTTAGGTC CTAATCCTGC CGATGATCTT
GACGTGTTCA ATAGACCAAA ATTCTTCTAT GGAAATGAGA CCCATCAGAA CTGCCCTAGG
GCGGGATTCT TCGCACAGGG CATTTTTGCC TATGAATTTG GAGACCCTCA ATGCACATAC
AGCCTTGGGT GTAAGGGTAC TGAGGCCAAT AGCCCAGCAC CTCTACTAGG ATGGGTGGGT
GGAGTTGGCG GATGTACTAG AGGCGGTGTA TGTATCGCAT GTACTGCTCC AGGATTTCCA
GATCTATATG AACCATTCTA TGCTCCACCA AACGCTCCCA CAATTCCTAG TACTACGTTG
TTCGCAGCTG CAGCAGCCGC AGGTATAATA GTAGGTGTGG GTAGTTATGC CTTCTCTAGG
AGGAAGAGGC TACCTCAGAT GCAAGGAGGC AAGAGGTGA
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| Protein sequence | MGLTRRDFLK VSGVTALGTS LALSGLSYEE LLSKAQEADQ PINIVWTGNG WCGGNTIAFI
DAMNPSVEDV VTGVYFNGKP ITLRQPSIPD LGMINLVYHP ILMPQDNMAY ATMEMALNGE
LDPFVLVVEG TMFDEFGVYY KKPSGSFWCS AGRKPDGSVL LCDEFVFNLM KKAAAVVATG
ACATYGGIPA TTNGLGQRSP TYAMGMLDDP YRGIYGFPYY VHQVYTQDLA PDIIDQDIYS
VTNSPVNTSW PGPSYHWLST AGLPIISIAA DPPAGDWIMR TLVSAVLYLR GLGPNPADDL
DVFNRPKFFY GNETHQNCPR AGFFAQGIFA YEFGDPQCTY SLGCKGTEAN SPAPLLGWVG
GVGGCTRGGV CIACTAPGFP DLYEPFYAPP NAPTIPSTTL FAAAAAAGII VGVGSYAFSR
RKRLPQMQGG KR
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