| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0728 |
|---|
| Symbol | |
|---|
| ID | 5103766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 665393 |
|---|
| End bp | 666877 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640506632 |
|---|
| Product | peptidase M61 domain-containing protein |
|---|
| Protein accession | YP_001190827 |
|---|
| Protein GI | 146303511 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.219972 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTTCA CTGTAAAGCC TAGGCCCAGA TATCTAGAAA TAGAGGCTCA TGGAAGAGAA
GGAATTGTAA TATTTCCCAC GTACCTACCT GGTTCCTACG TAGTCAGGGA GCTAGAAAGA
AACATTGTCG AGATCGATGG GGTTAGGATT TCAAAGAATC GTTTTTACGT CAAGGAAAAC
TTTAGATATC TAGTTTACGC ATCCAGTAAG GACCAGAGAG AGGCCATCTC CTCCACCGAT
TATCTTTTTA TAAATCCCCC TGCCGTGTTT CCCTTTCAGG ATTGGAACGA GAGGTACTGT
GTCAAGTTGG ACTTGAGATG GCCCGTTAGC ACGACGCTGA GGAGAGAAGG GGAGTATCTA
TGTGCAGATG ACTATGAAAC TTTTGTGGAC TCGCCAATCC AAGCAAGTCC AAACCTGAAA
ACCCTTGTTA TAGACGACCA CCATGAGATA ACCACAGTAG ATGATCTTGA TCTGACGGGA
GTAGCCATGG CAATCAAGGA AATAGACAAG GAGATGGGTA CACCAGATAG GTACACCTTC
TTCTTCAGGA GGTCAGACAG AAACTACGGA GGCATTGAGC ACTATAACTC CTCCGCAATC
GTGGTAAACT GGGAAAGATC TGACCTAGTC ATGCTAATGG CTCACGAGTA TTTTCATAGC
TGGAACGTGA AAAGGTACAG GCCAAAGGAT CTCGAACTAG ACTTGGAAAA GGAGACCCAC
TCGGATCTAC TTTGGTTTGC TGAGGGGGTG ACGGATTACG TGGCTTGGCT AGCTTCCACG
AGAAGCGGTG CAGTGAAGAG TGAGGACACT GGAAAATACA TGGCTAACGC TATCTCCAAG
TTCACCTTTC CTGGGGCAAA GAGAATGTCG TTGGCTGAGT CCTCTAGAAC CACATGGATA
AAGTATTACA GGCAAGACGA GAACTTCCTG AATTCCTCAG TTTCCTATTA TGACGGAGGA
CTATTACTGG GGCTGATACT TGACGCGAGG CTTAGGAGAA GCGGTGAGAA CATATTTAGC
ATATTCAAGA ACATACCTTT CAGGTATACG TTTAGCGATA TTGACAATTA CCTGAAATCA
AGGGGCATAG ATGACCTAGA GGAGATGGCG TACTCCCCGT CCTCTATCCT CCTAGAGAAA
CTTAAGGAGG TAGCCGAGCT TCAATTTCTG GATGGGGGAA ATCCTTACCT CGGAATCATG
ATGGACGGTA ACAAAGTGAC TTATGTGGAG GACGGTTCCC CTGCTGATAT GGCGGGCTTG
ATGCCCCAAG ATATCATTCT AGCAACGGAC AACGTGGTAA GACCTGTTGA AGTGAAGGCG
CAGGTGGAAC TCCTAGTAAA TAGGGAGGGA AGGGTGAAGA GGGTGTTGGT CACGGCAGGA
AGGAACCCAG GACACAGGGT GAAGTTCACG ATCAAGGGGG ACATTGCGAA GCAGTTGTTG
GGGATGGATT CCTTGGATGG AACTTCATCC ATAAGCTTGA TCTAG
|
|---|
| Protein sequence | MLFTVKPRPR YLEIEAHGRE GIVIFPTYLP GSYVVRELER NIVEIDGVRI SKNRFYVKEN
FRYLVYASSK DQREAISSTD YLFINPPAVF PFQDWNERYC VKLDLRWPVS TTLRREGEYL
CADDYETFVD SPIQASPNLK TLVIDDHHEI TTVDDLDLTG VAMAIKEIDK EMGTPDRYTF
FFRRSDRNYG GIEHYNSSAI VVNWERSDLV MLMAHEYFHS WNVKRYRPKD LELDLEKETH
SDLLWFAEGV TDYVAWLAST RSGAVKSEDT GKYMANAISK FTFPGAKRMS LAESSRTTWI
KYYRQDENFL NSSVSYYDGG LLLGLILDAR LRRSGENIFS IFKNIPFRYT FSDIDNYLKS
RGIDDLEEMA YSPSSILLEK LKEVAELQFL DGGNPYLGIM MDGNKVTYVE DGSPADMAGL
MPQDIILATD NVVRPVEVKA QVELLVNREG RVKRVLVTAG RNPGHRVKFT IKGDIAKQLL
GMDSLDGTSS ISLI
|
|---|
| |