| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0677 |
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| Symbol | sdhA |
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| ID | 5105283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 619342 |
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| End bp | 621042 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640506581 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001190776 |
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| Protein GI | 146303460 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0486405 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000605931 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACAAAC TTCTTTATGA CGCAGTAGTT CTTGGAGGAG GATTAGCGGG GTTAATGTCG
GCCCATGAAA TCGCCTCAGC AGGCTATAGG GTAGCGATCA TTTCTAAGGT TTTTCCCACA
AGGTCTCACT CCTCCTCCGC GGAAGGTGGA ATAGCTGCAT ATGTCCGGGG TAACTCCGAT
CCCAACGACA ATCCAGACTA CATGACCTAT GACACGGTCA AGGGAGGAGA TTACCTAGTC
GATCAGGACG CTGCGGAACT TCTATCTGAA AAATCTGGAG AAATAGTGGA GATAATGGAG
AGGTGGGGTA CGCTATTCAA TAGGCAACCA GACGGGAGGG TAGCTCTGCG TTATTTCGGT
GGACAGACCT ATCCCAGGAC CAGATTCGTT GGGGATAAGA CTGGCATGGC CCTTTTGCAC
ACCCTGTTCG AAAGGGTCTC AGGTCTCTCA GTGGATTTCT ATAGCGAGTG GTTTGCGGTG
GACCTGGTGC TGGACGAGAA GAGGGTAGCT GGAGTTCTGG CCATGGAAAT GAAGTCCATG
GAACCGGCCC TGTTCAAGGC AAAGGCTGTT GTGCTAGCCA CCGGTGGTAT GGGGATGCTA
TACGCGCACA CGACCAACGC CTACATAAAC ACGGGTGACG GTTACTCTAT GGCTCTGAGG
GCTGGAGCGG CCCTGAAGGA TCCCGAATTT GTTCAGTTCC ACCCAACTGC GCTCTATCCC
TCAGACATTC TGATAAGTGA GGCGGCAAGG GGAGAAGGAG GTATCCTCAA GAACAATAAG
GGGGAGAGAT TCATGACCAG ATATGCTCCC AAGAAGTTGG ACCTTGCCCC CAGGGATATT
GTCTCTAGGT CCATCACAAT AGAGATAAGG GAGGGAAGAG GTTTCCCTGG CGGGTATGTT
GGATTGGACC TTACCCATCT GGGAGAGAGC TACATAAAGG AGAGACTTGC GTTGGCTTAC
GAGGCTGCCA TGAGTTTTGC GGGGGTTGAT GCTACTAAGG AGCCCATCCC TGTTAGACCT
GCACAGCACT ACTATATGGG TGGAGTGGAC GTGGACATTA CTGGAACCAA TAGTGATTTG
CAAGGACTAT TTGCGGCAGG CGAGGTAGCT TGCGTATCTG TCCACGGTGC CAACAGGCTG
GGCTCCAACT CCTTGCTAGA AACCCTCGTT TTTGGTAGGG AAACTGGAAG AACTGTAGTG
GAGTACCTCA AGAAGCACGA GGAGTCATCC TCAACCACCC TGGAGAAGGA AGCAGAGAAA
CTTCTAAGCG AGGCCTACAC CTTTGTGAAG AGCGAGACCG GAGTCCACTT CGGCGAAATA
CTCAACAAAC TTAGGCAGGT AATGTGGGAT GATGTGGGGA TTTTCAGGAA CGAGGACCTA
TTAAAGACTG CCCTCTCAGA GGTCGAGAAA CTTAGGGCAC AGGTCAAGAG CATGTATGTG
ACTGACAAGA GCAAGACCTA CAATACCGAG TTCTTTAACG CATTGGAGCT GAGAAACATG
ATGGACCTCG CGGTGGTAAT AGCCAAGTCA GCGTTAACTA GAACCGAATC AAGAGGAGCT
CATTACAGGA CGGACTATCC AGAGAGAGAT GATAGGAACT GGCTCAAACA TACGTTGGCT
TACCTCAAGG GTAATCAGGT AGAGATAGGG TTTAAGCCCG TGACCATGAC TAGGTGGCAA
CCAGAGGCAA GGGTGTACTA A
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| Protein sequence | MDKLLYDAVV LGGGLAGLMS AHEIASAGYR VAIISKVFPT RSHSSSAEGG IAAYVRGNSD
PNDNPDYMTY DTVKGGDYLV DQDAAELLSE KSGEIVEIME RWGTLFNRQP DGRVALRYFG
GQTYPRTRFV GDKTGMALLH TLFERVSGLS VDFYSEWFAV DLVLDEKRVA GVLAMEMKSM
EPALFKAKAV VLATGGMGML YAHTTNAYIN TGDGYSMALR AGAALKDPEF VQFHPTALYP
SDILISEAAR GEGGILKNNK GERFMTRYAP KKLDLAPRDI VSRSITIEIR EGRGFPGGYV
GLDLTHLGES YIKERLALAY EAAMSFAGVD ATKEPIPVRP AQHYYMGGVD VDITGTNSDL
QGLFAAGEVA CVSVHGANRL GSNSLLETLV FGRETGRTVV EYLKKHEESS STTLEKEAEK
LLSEAYTFVK SETGVHFGEI LNKLRQVMWD DVGIFRNEDL LKTALSEVEK LRAQVKSMYV
TDKSKTYNTE FFNALELRNM MDLAVVIAKS ALTRTESRGA HYRTDYPERD DRNWLKHTLA
YLKGNQVEIG FKPVTMTRWQ PEARVY
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