| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0653 |
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| Symbol | |
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| ID | 5103813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 599187 |
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| End bp | 599723 |
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| Gene Length | 537 bp |
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| Protein Length | 178 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640506557 |
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| Product | putative RNA-processing protein |
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| Protein accession | YP_001190752 |
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| Protein GI | 146303436 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1094] Predicted RNA-binding protein (contains KH domains) |
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| TIGRFAM ID | [TIGR03665] arCOG04150 universal archaeal KH domain protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.873833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.171663 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTTGTGA GTGTGCCAGA CGAGAAACTT GATCTCGTGA AGTCCCTCCT TGACGATCTG
TCGAGAATGG GAGGGGTAGA AATAATATAT GATGAAAAGG TGAAAAATTT CATAGTAGAT
CCGAAGAACC AGAACCCGTA TCAGGCTCTC AAGGTAGTAT CCGTTATAAG GGCCATAGGT
CTTGGCGTTT CTGTATCAGA CGCTCTGAAG TTAATGGGAG AGGAGGTTAT GATGGATGTT
ATAGACCTAA AGGAGATCTC CAACAGCAGA GATAACATGA CTAGAGTGAA GGGCAGAATT
ATAGGCGAAG GTGGAAAAAC CAAGAAAATA ATCCAGGAGT ATACAGGAGT AAGTGTGGTA
ATCTCAGGGC ATTATATTAC TTTACTGGGT AATTACGAGC AAATACCCAT AGCCAAGAAG
GCGTTAGAGT TGCTGGTGAA GGGAAGGGAG CATTCAACAG TATACAGATA TCTTGACAGA
GCAGAACAAC AGTTGATCAG ATATAGATCA TCCTATAAGG GTAAACCCAT CCTGTAA
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| Protein sequence | MFVSVPDEKL DLVKSLLDDL SRMGGVEIIY DEKVKNFIVD PKNQNPYQAL KVVSVIRAIG
LGVSVSDALK LMGEEVMMDV IDLKEISNSR DNMTRVKGRI IGEGGKTKKI IQEYTGVSVV
ISGHYITLLG NYEQIPIAKK ALELLVKGRE HSTVYRYLDR AEQQLIRYRS SYKGKPIL
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