Gene Msed_0592 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0592 
Symbol 
ID5105564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp544543 
End bp547170 
Gene Length2628 bp 
Protein Length875 aa 
Translation table11 
GC content46% 
IMG OID640506496 
ProductS-layer-like domain-containing protein 
Protein accessionYP_001190691 
Protein GI146303375 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1361] S-layer domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.725449 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.911146 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTTAA ATACTAAAGA TATATCTTTA GCAACCATGA CATCAAGGTC TTTGTACATT 
ACGTTAATAA CCGGACTATT GCTTCTTGGA ACATTTTTCG CGACTGTTTC AGTTGGTTTT
GGAATAGGAA TTTCCTCTCC TCAGTTGCAC TTTATAATGT ACGCCAGACC CCTAGAGGAA
CCATTGGCTC CTGGAATGAC GGATGTCCCA ATCAACTTCA CTTTGATTAA TGCCAACAAT
TTTGCACTGT ATGATGTTAA TATCTCAGCA TTTAGCGTAT ATCCCTTCAC CCTTATAAAT
TATTACAATA ATACACAAAA TACATCAATA CTTCAATGGA ATCCAGGGCA GGTAATCAAC
GTAATTTACT ACTACAATAT TAATACCTCC GCCTCTAACG GAGTCTATAA TATAAGCCTG
AAGGTCGCAG GACCAATTTC GATATTTCAC AAATTCCATG AGACTGTTAA TGCCTCTGTT
GCTATCCTAG GCTACACCAG GGCATCAGTT CAGGCAGTTT GGGGTTCTCC CTCCTCACCT
CAACTGGTCG CACCTGGTGA CAACAACGTT CCCATAACAC TCATCATAGA CAACCAGGGC
AACGTGGAGA TGTCCAACGC CTCTCTTCTC CTAACCTCAA CCTACCCCAT CAAGTTCATG
CAGAACTACC TCAACATAGG CTACTTACCG CCAGGACAAC CCATTGAGGT CACAACCTAT
GCCTCGGTTT ACCCCAACGC GACCACGGGA GTATACCAGG TCCCCGCCCA AATCCAGTAT
TTCTCACATT CCAGGATAAC TACTACGATA TCTATTCCAA TTACTGGTTA CGCTAATTTC
TCCGCCACTA CAATCTGGGG AAGCACATCT AATCCCCTAG TGGCCGGAGC TGGGAGTGCT
AGGCTTCCGC TCACCATAAT ACTCAACAAC CTGGGCGACG TCAATGTGGA CAACGTTTCA
ATTACCTTCC CTCAGAACGA GTTCCCATTA CATTTCCTGC AAACTAGCGG TTACCTTGGC
ATAATACCTG CAGGACTTTA CTCAGAAACT ACGCTGACTG TCTCGGTGTA CTCTAACGCC
TCTCCTGGCG TGTACTATGT CAAGGGAACT ATAAACTACT TTGACGAGAA GCAAACCATT
TACGTACCAG TCGCCATCCT AGGCTACACC AGGGCATCAG TTCAGGCAGT TTGGGGTTCT
CCCTCCTCAC CTCAACTGGT CGCACCTGGT GACAACAACG TTCCCATAAC ACTCATCATA
GACAACCAGG GCAACGTGGA GATGTCCAAC GCCTCTCTTC TCCTAACCTC AACCTACCCC
ATCAAGTTCA TGCAGAACTA CCTCAACATA GGCTACTTAC CGCCAGGACA ACCCATTGAG
GTCACAACCT ATGCCTCGGT TTACCCCAAC GCGACCACGG GAGTATACCA GGTCCCCGCC
CAAATCCAGT ATTTCTCAGG GAAGGAGGTG ATCAGTACCT TCATCACTGT TCCCATAGTT
GGTTACGAGA CTTTCTCCGT ATCCAGCGTC TGGGGATCCA CCTCTTCACC CTTGACCGCT
GCACCAGGTC AAACTAATCT TCCCTTAACC TTCATTGTGA GAAACCTAGG GGATGTAAAT
GCGCTCAACG TTTCGCTATA CGTCAGTAGT TCGGAGTTCC CCATTCAATT CACCCAGAAT
TCTCTTATGA TAGGGATAGT TCCAGCAGGT CAGATTAACG AGGGTACAAT AACCGTGAAC
GTATATCCCA ACGCGACGCC TGGGACGTAT TACATACCAG TGATTATGCA TTATAGTCAA
GTTAATGTAA CTGAGTACGT TCCGGTTACC GTTTACCCAC CTAAGATAGC TCTCTCACTT
TTCACCGTGC CACCTCAGGT ATTTCCAGGA TTTTATGATG TGAGGGTTGA AGGTGTAATC
ACCAATTACG GAACTGCCGC GGCACAGAAC TCGTATGTCC TACTACAGTC GCCCTTCCCA
GTGATTTCTC AAAATAACTT GACTATTGGG GCTATCCCTC CCGGTGTGCC CATAAATGTG
TCCTTCCTCA TTAACGTACC AGACTCGGTC AGCCCAGGGC AGTACCACCT TAATTTCACA
GTATTCTACG ATGGTGGGAG TTACACCAAA TCTTACTCCT TGACAGTATA TCCTAAGGCC
AATCTAACAA TAGTTAAAGT AATATATCCA TCCTTACAGG CAGGTGATAC TAAAGTCCCC
ATTACCTTGA TTGTTAAGAA TGTGGGTAAC GCAACTGCCA AGAATGTTAA GGCGATACTT
GGAACTTCTG ACGTAATATA TCCTCACGTG AGTTCATCCA ATCCCTTACA GGGCTTGACC
GCGTCTGAGT CGAGTTTAGG TGATATAGGT CCTGGACAAG AGATTAACGT TACTTACGTG
GTCGACGTAA GCGGAGGAGC ATCTGTTGGT TCATATCCAT TGACGCTGAC ACTAGTTTGG
AACCAGACAG GATCCCTTGT CCCATTCGTT CAAAATGATC ACTTCTTCGT CACTGTAACG
CCTCCGTTGA CATCAGTGAT CGTCCAGAAC CCTGCATTTT ACATTGCCAT TGTTGTAGTG
ATTATAATCA TTGTAGTTGT TCTAATTTTG CTCAGAAGGA AGAAGTGA
 
Protein sequence
MTLNTKDISL ATMTSRSLYI TLITGLLLLG TFFATVSVGF GIGISSPQLH FIMYARPLEE 
PLAPGMTDVP INFTLINANN FALYDVNISA FSVYPFTLIN YYNNTQNTSI LQWNPGQVIN
VIYYYNINTS ASNGVYNISL KVAGPISIFH KFHETVNASV AILGYTRASV QAVWGSPSSP
QLVAPGDNNV PITLIIDNQG NVEMSNASLL LTSTYPIKFM QNYLNIGYLP PGQPIEVTTY
ASVYPNATTG VYQVPAQIQY FSHSRITTTI SIPITGYANF SATTIWGSTS NPLVAGAGSA
RLPLTIILNN LGDVNVDNVS ITFPQNEFPL HFLQTSGYLG IIPAGLYSET TLTVSVYSNA
SPGVYYVKGT INYFDEKQTI YVPVAILGYT RASVQAVWGS PSSPQLVAPG DNNVPITLII
DNQGNVEMSN ASLLLTSTYP IKFMQNYLNI GYLPPGQPIE VTTYASVYPN ATTGVYQVPA
QIQYFSGKEV ISTFITVPIV GYETFSVSSV WGSTSSPLTA APGQTNLPLT FIVRNLGDVN
ALNVSLYVSS SEFPIQFTQN SLMIGIVPAG QINEGTITVN VYPNATPGTY YIPVIMHYSQ
VNVTEYVPVT VYPPKIALSL FTVPPQVFPG FYDVRVEGVI TNYGTAAAQN SYVLLQSPFP
VISQNNLTIG AIPPGVPINV SFLINVPDSV SPGQYHLNFT VFYDGGSYTK SYSLTVYPKA
NLTIVKVIYP SLQAGDTKVP ITLIVKNVGN ATAKNVKAIL GTSDVIYPHV SSSNPLQGLT
ASESSLGDIG PGQEINVTYV VDVSGGASVG SYPLTLTLVW NQTGSLVPFV QNDHFFVTVT
PPLTSVIVQN PAFYIAIVVV IIIIVVVLIL LRRKK