| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0592 |
|---|
| Symbol | |
|---|
| ID | 5105564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 544543 |
|---|
| End bp | 547170 |
|---|
| Gene Length | 2628 bp |
|---|
| Protein Length | 875 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640506496 |
|---|
| Product | S-layer-like domain-containing protein |
|---|
| Protein accession | YP_001190691 |
|---|
| Protein GI | 146303375 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1361] S-layer domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.725449 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.911146 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTAA ATACTAAAGA TATATCTTTA GCAACCATGA CATCAAGGTC TTTGTACATT
ACGTTAATAA CCGGACTATT GCTTCTTGGA ACATTTTTCG CGACTGTTTC AGTTGGTTTT
GGAATAGGAA TTTCCTCTCC TCAGTTGCAC TTTATAATGT ACGCCAGACC CCTAGAGGAA
CCATTGGCTC CTGGAATGAC GGATGTCCCA ATCAACTTCA CTTTGATTAA TGCCAACAAT
TTTGCACTGT ATGATGTTAA TATCTCAGCA TTTAGCGTAT ATCCCTTCAC CCTTATAAAT
TATTACAATA ATACACAAAA TACATCAATA CTTCAATGGA ATCCAGGGCA GGTAATCAAC
GTAATTTACT ACTACAATAT TAATACCTCC GCCTCTAACG GAGTCTATAA TATAAGCCTG
AAGGTCGCAG GACCAATTTC GATATTTCAC AAATTCCATG AGACTGTTAA TGCCTCTGTT
GCTATCCTAG GCTACACCAG GGCATCAGTT CAGGCAGTTT GGGGTTCTCC CTCCTCACCT
CAACTGGTCG CACCTGGTGA CAACAACGTT CCCATAACAC TCATCATAGA CAACCAGGGC
AACGTGGAGA TGTCCAACGC CTCTCTTCTC CTAACCTCAA CCTACCCCAT CAAGTTCATG
CAGAACTACC TCAACATAGG CTACTTACCG CCAGGACAAC CCATTGAGGT CACAACCTAT
GCCTCGGTTT ACCCCAACGC GACCACGGGA GTATACCAGG TCCCCGCCCA AATCCAGTAT
TTCTCACATT CCAGGATAAC TACTACGATA TCTATTCCAA TTACTGGTTA CGCTAATTTC
TCCGCCACTA CAATCTGGGG AAGCACATCT AATCCCCTAG TGGCCGGAGC TGGGAGTGCT
AGGCTTCCGC TCACCATAAT ACTCAACAAC CTGGGCGACG TCAATGTGGA CAACGTTTCA
ATTACCTTCC CTCAGAACGA GTTCCCATTA CATTTCCTGC AAACTAGCGG TTACCTTGGC
ATAATACCTG CAGGACTTTA CTCAGAAACT ACGCTGACTG TCTCGGTGTA CTCTAACGCC
TCTCCTGGCG TGTACTATGT CAAGGGAACT ATAAACTACT TTGACGAGAA GCAAACCATT
TACGTACCAG TCGCCATCCT AGGCTACACC AGGGCATCAG TTCAGGCAGT TTGGGGTTCT
CCCTCCTCAC CTCAACTGGT CGCACCTGGT GACAACAACG TTCCCATAAC ACTCATCATA
GACAACCAGG GCAACGTGGA GATGTCCAAC GCCTCTCTTC TCCTAACCTC AACCTACCCC
ATCAAGTTCA TGCAGAACTA CCTCAACATA GGCTACTTAC CGCCAGGACA ACCCATTGAG
GTCACAACCT ATGCCTCGGT TTACCCCAAC GCGACCACGG GAGTATACCA GGTCCCCGCC
CAAATCCAGT ATTTCTCAGG GAAGGAGGTG ATCAGTACCT TCATCACTGT TCCCATAGTT
GGTTACGAGA CTTTCTCCGT ATCCAGCGTC TGGGGATCCA CCTCTTCACC CTTGACCGCT
GCACCAGGTC AAACTAATCT TCCCTTAACC TTCATTGTGA GAAACCTAGG GGATGTAAAT
GCGCTCAACG TTTCGCTATA CGTCAGTAGT TCGGAGTTCC CCATTCAATT CACCCAGAAT
TCTCTTATGA TAGGGATAGT TCCAGCAGGT CAGATTAACG AGGGTACAAT AACCGTGAAC
GTATATCCCA ACGCGACGCC TGGGACGTAT TACATACCAG TGATTATGCA TTATAGTCAA
GTTAATGTAA CTGAGTACGT TCCGGTTACC GTTTACCCAC CTAAGATAGC TCTCTCACTT
TTCACCGTGC CACCTCAGGT ATTTCCAGGA TTTTATGATG TGAGGGTTGA AGGTGTAATC
ACCAATTACG GAACTGCCGC GGCACAGAAC TCGTATGTCC TACTACAGTC GCCCTTCCCA
GTGATTTCTC AAAATAACTT GACTATTGGG GCTATCCCTC CCGGTGTGCC CATAAATGTG
TCCTTCCTCA TTAACGTACC AGACTCGGTC AGCCCAGGGC AGTACCACCT TAATTTCACA
GTATTCTACG ATGGTGGGAG TTACACCAAA TCTTACTCCT TGACAGTATA TCCTAAGGCC
AATCTAACAA TAGTTAAAGT AATATATCCA TCCTTACAGG CAGGTGATAC TAAAGTCCCC
ATTACCTTGA TTGTTAAGAA TGTGGGTAAC GCAACTGCCA AGAATGTTAA GGCGATACTT
GGAACTTCTG ACGTAATATA TCCTCACGTG AGTTCATCCA ATCCCTTACA GGGCTTGACC
GCGTCTGAGT CGAGTTTAGG TGATATAGGT CCTGGACAAG AGATTAACGT TACTTACGTG
GTCGACGTAA GCGGAGGAGC ATCTGTTGGT TCATATCCAT TGACGCTGAC ACTAGTTTGG
AACCAGACAG GATCCCTTGT CCCATTCGTT CAAAATGATC ACTTCTTCGT CACTGTAACG
CCTCCGTTGA CATCAGTGAT CGTCCAGAAC CCTGCATTTT ACATTGCCAT TGTTGTAGTG
ATTATAATCA TTGTAGTTGT TCTAATTTTG CTCAGAAGGA AGAAGTGA
|
|---|
| Protein sequence | MTLNTKDISL ATMTSRSLYI TLITGLLLLG TFFATVSVGF GIGISSPQLH FIMYARPLEE
PLAPGMTDVP INFTLINANN FALYDVNISA FSVYPFTLIN YYNNTQNTSI LQWNPGQVIN
VIYYYNINTS ASNGVYNISL KVAGPISIFH KFHETVNASV AILGYTRASV QAVWGSPSSP
QLVAPGDNNV PITLIIDNQG NVEMSNASLL LTSTYPIKFM QNYLNIGYLP PGQPIEVTTY
ASVYPNATTG VYQVPAQIQY FSHSRITTTI SIPITGYANF SATTIWGSTS NPLVAGAGSA
RLPLTIILNN LGDVNVDNVS ITFPQNEFPL HFLQTSGYLG IIPAGLYSET TLTVSVYSNA
SPGVYYVKGT INYFDEKQTI YVPVAILGYT RASVQAVWGS PSSPQLVAPG DNNVPITLII
DNQGNVEMSN ASLLLTSTYP IKFMQNYLNI GYLPPGQPIE VTTYASVYPN ATTGVYQVPA
QIQYFSGKEV ISTFITVPIV GYETFSVSSV WGSTSSPLTA APGQTNLPLT FIVRNLGDVN
ALNVSLYVSS SEFPIQFTQN SLMIGIVPAG QINEGTITVN VYPNATPGTY YIPVIMHYSQ
VNVTEYVPVT VYPPKIALSL FTVPPQVFPG FYDVRVEGVI TNYGTAAAQN SYVLLQSPFP
VISQNNLTIG AIPPGVPINV SFLINVPDSV SPGQYHLNFT VFYDGGSYTK SYSLTVYPKA
NLTIVKVIYP SLQAGDTKVP ITLIVKNVGN ATAKNVKAIL GTSDVIYPHV SSSNPLQGLT
ASESSLGDIG PGQEINVTYV VDVSGGASVG SYPLTLTLVW NQTGSLVPFV QNDHFFVTVT
PPLTSVIVQN PAFYIAIVVV IIIIVVVLIL LRRKK
|
|---|
| |