| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0444 |
|---|
| Symbol | |
|---|
| ID | 5105440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 398865 |
|---|
| End bp | 400277 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640506350 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001190545 |
|---|
| Protein GI | 146303229 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGG TATTGAGAGA CCTGCTAAGC AGGAAAACTT TCATTTTCTC GGTAGTCGTA
ATCCTTTTCT TTGCTGCTAT TGCCCTTTTA GCTCCAGTTC TAACGTCATA CAACAATCCT
TATCTAGTTT CACAACAGTT CGTTGCGGCC CCCTACGCTG TTCCTTCGTG GGCCACAATC
TTCCCTCAAT ATCATGGTCT TCCCCCTGAC GTTAGAATGA CGTTGTCTCC CTCTGAGACC
TCAGGACTTA CCCCCATTAA CTCGTCCATG GTTAAGGTGG AGGTTCCTGC AGGGGGTCAG
GTTAATCTGA CTTACGCCAT TAGATGGAAT TGGAGTTCTC CATACAACGT ACTTCTGTCC
TTTACCCTAG TTACGCCATC TACAAGCGAC TTTAACGTAA ATCTTTACAT GAACAATATC
AACTTCATGG AACTGTCACC TTTACCGATA CCTCCTGCAG TTAGCGTTAC TCCCGGGAAG
GCCAATTACG TTACCTTCTC TTCAGAAACT ATAAACCCAA GCAATTCTCC GTACGTAAGC
TCCCTTCCCT TCCAAGATCA GCCCTTAGCA TCACTTGAGT TCCCCAAGGC TGTACTGCCT
AAACCTGGGA TATATTACCT GATTATATCA TTCCAGAATA CAGGAAATTC ACCTGAGACT
TTCCTTGTTT CCAACCCACA TTACTCCTCT CTTGGTTACG CTTATGGTAG GTTGGGAACA
GATGATAATG GCGCGAGCGT GTTCTCGGAG TTCGTGTATG GAGCGAGGTT CGATCTCTAT
TTAGCCCTTG TAGCCTCAGC CCTTATTATA GGAATAGGAC TCATAATTGG GCTGATAGCG
GGCTACGTGG GCGGTTTCAC GGATCTGGCC CTGAATGCTC TTACAGACTT CTTTCTGTTA
ATACCGGGTT TACCTCTCTT GATTGTTTTG ATCTCTATCT TCGATCTCAC TGGGGTCATA
GTTAACGTGA ACAAGGCCGT CCTTATACTA CTCATCATCT CGTTGTTATC ATGGCCTGGG
ACTGCTAAGA TAATTAGGGG ACAGACACTA AGCCTCAGGA ACAGAACCTT CGTGGAAGCT
TCTAGGGCTC TGGGCGAGGG AAGGTTTAGG ATCCTGTTCA GACATATAGT TCCCAACCTG
ATGGGAATTC TATTTGCTCA ACTGGCATAT GACGTTCCAG GCGTTATCCT GGCTGAGTCG
GGTCTCGACT TCCTGGGCCT GGGAATTACA GAGTTCCCGA CCTGGGGAAA CATGCTTGGA
TTTGCCACCA ATGATTTGTC CTTTGCCAAT GGGTTTGCAT GGTGGTGGGT GCTTCCACCT
GGAATTGGGA TAATATTGTT AAGTACAGCG TTCTACTATT TCGGGACAGC AATGCTTGAC
GTCCTTAGTC CCTACAAGCT TAGGGGTGAA TGA
|
|---|
| Protein sequence | MNKVLRDLLS RKTFIFSVVV ILFFAAIALL APVLTSYNNP YLVSQQFVAA PYAVPSWATI
FPQYHGLPPD VRMTLSPSET SGLTPINSSM VKVEVPAGGQ VNLTYAIRWN WSSPYNVLLS
FTLVTPSTSD FNVNLYMNNI NFMELSPLPI PPAVSVTPGK ANYVTFSSET INPSNSPYVS
SLPFQDQPLA SLEFPKAVLP KPGIYYLIIS FQNTGNSPET FLVSNPHYSS LGYAYGRLGT
DDNGASVFSE FVYGARFDLY LALVASALII GIGLIIGLIA GYVGGFTDLA LNALTDFFLL
IPGLPLLIVL ISIFDLTGVI VNVNKAVLIL LIISLLSWPG TAKIIRGQTL SLRNRTFVEA
SRALGEGRFR ILFRHIVPNL MGILFAQLAY DVPGVILAES GLDFLGLGIT EFPTWGNMLG
FATNDLSFAN GFAWWWVLPP GIGIILLSTA FYYFGTAMLD VLSPYKLRGE
|
|---|
| |