| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0170 |
|---|
| Symbol | |
|---|
| ID | 5104959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 137517 |
|---|
| End bp | 138554 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640506073 |
|---|
| Product | acetyl-lysine deacetylase |
|---|
| Protein accession | YP_001190271 |
|---|
| Protein GI | 146302955 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01902] N-acetyl-ornithine/N-acetyl-lysine deacetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000443828 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.22907 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTAG AAAAGGAGTT GCTGAAACAG AAGGCAAGAA AACTTCTTGA GCAATTATTA
AGCGTTTATA CGCCTTCAGG CCAGGAGGGT CTAGCCAAAG GGATTTTTCA AAAGATAGCT
GATGAGCTGA ATCTGAATCT GTATGTGACT TCGACGAATT CCTTTTTCCT TGGTGATGGA
GAAATACTAC TAGCCTCCCA CATTGATACC GTCCCAGGTT ACATACCACC TTCAATATTA
GGCGAAGAGA TTACAGGAAG GGGAGCGGTG GACGCAAAGG GACCTCTAGT TTCAATGATA
CTTGCATCCT GGATAATGAA CGAGAGGGGT TGCAAGGTCC AGGTAGGTGC TCTATCGGAT
GAGGAGAATA AAAGCGCAGG AGCCAGGGAA CTAGTTTCCT CGGGAAAAAG ATTCTCACAC
ATAATTGTGG GTGAACCTAC CAACACCACA CATATCGCTG TGGAGTACAG GGGATTATTG
AGGATCAACG TTAACTGTCA CGGGAAACCA GAGCACTCGT CCTCAGCCAC GGATAACATT
ATCCTTAAGT ATATTCCCGC CATCCTAGAG TCCTCACAAC TTCCTTCACA ATATTCTTCA
CCGAGTATTG TCCCAACCAT AGTTAGGAGT GGCGACTCTC CTAACGTTAC CCCAAGCGAC
TTTTACGTCC ATTTTGACGT GAGGTATCCA TATGGAATCT CAGAAGGTGA TATTCTGTCC
AAGATTTCTG AGAAATTCGA AGGATGTGAT CTGACCGTGG GTGAATCCAT TCCCCCTGTA
AAAGTTGGAC CCTCGACGCC TGCTGTAAGG GCACTCATGA GGGGGTTACT TCAACAGGGA
GTAAAGCCAT CCTTAGTGAG AAAGGGAGGA ACGAGTGATA TGAACTTGCT AATCTCTATT
ACCCCCAGTA TAGCAACATA TGGACCCGGC GATTCTAGAT TAGAGCATAC TGAGTTTGAA
AGGATAACTC TCGATGAAAT ATATATAGCC ACACTCACCT ATGTCAATGC ACTAGAAGAG
TTATGCTTAA AGCATTGA
|
|---|
| Protein sequence | MQLEKELLKQ KARKLLEQLL SVYTPSGQEG LAKGIFQKIA DELNLNLYVT STNSFFLGDG
EILLASHIDT VPGYIPPSIL GEEITGRGAV DAKGPLVSMI LASWIMNERG CKVQVGALSD
EENKSAGARE LVSSGKRFSH IIVGEPTNTT HIAVEYRGLL RINVNCHGKP EHSSSATDNI
ILKYIPAILE SSQLPSQYSS PSIVPTIVRS GDSPNVTPSD FYVHFDVRYP YGISEGDILS
KISEKFEGCD LTVGESIPPV KVGPSTPAVR ALMRGLLQQG VKPSLVRKGG TSDMNLLISI
TPSIATYGPG DSRLEHTEFE RITLDEIYIA TLTYVNALEE LCLKH
|
|---|
| |