| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0134 |
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| Symbol | |
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| ID | 5104987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 108871 |
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| End bp | 110484 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640506035 |
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| Product | DEAD_2 domain-containing protein |
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| Protein accession | YP_001190235 |
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| Protein GI | 146302919 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1199] Rad3-related DNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00117441 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAATAA CTTTGAGGGA ATGGCAGAAA CAGAAATTCG ATGAAGCTTT GAACGCTTTA
AAGACTAAAA ATACGCTTCT CCTCAATGTA ACTACTGGAG CTGGAAAAAC ACTATTTACA
CTACTGTTAG GTAAAGCACT GCATAAGAAG ATCCTATTCC TTACAAGAAC GCACAGTGAG
TTTGAGGCAG TGAGGCGGGA AGCAGAAAGA TTAGGGCTTA AAGTAGCCTA CCTCTTTGGC
AAGAACTCTG TCTGTCCATT CGCAACCGAT GACGTTAAGC CTGAGGACAT AGAGTGCAGG
GAATGTTCAT TGAGGGATAA AATTAAGGAC TTAAGTGGAT TAAAGCCATT TCAAATACTT
CAATTGAGTA AGGACGCTTC TGATTTCTGC CCTTACCATT CTCTTAGGGC TTTAATAACT
AAGGTAGACG TTATCGTAGC TTCCTACATG TACTTCTTCA ACCCCTTTCT GAGGAGGAAG
ATAGTATGCG GGTCACAAGA CTGTATTAAA CCGGACGAGC TCTTAGTAAT TGTAGATGAA
GCTCACAATT TGATCAATGG GGATGAGTGG TTTTCTAAGA AGATAGGCAA AAAGACTGTA
AACAATGCAT TGAAGGAGTT GGATGAGGTA GAGAGCAATA CGAATAACGA TTTGGGTGAT
GTTAGGGCAT TTCTCGTAGA ACTGGGTAAG TTTTTGGAAA ATATAGTGGA TGATGGAGGG
TGTAGGGAAT TGCCTTTGTA TCCTAAACCT TCAGCTGAAG TCTTACTGCA AATCCATAAA
GCCTCATTAT CTTACCTTAA TATGATAAAA GGACCTATTA AGAGGTCTTA TTTGAGGTCA
GTATACGATT TCTTTAATAC TGAAGGTGAT ACGTTTAACT GCAACGGAAA GCTCATGGTA
ATCCCTTCAG ATACTATAGA GATGATAAAA GAGTCATTCA ATTTTGCAGA TAAAAGGGTA
TTAATGAGCG GTACTTTGCC GGATTTAGGT TTAGAAGGAT ATAGGATAAA CGTTGAAGTT
AGATTGGGGA AAGCGGAATA CTATTACTGC AGTTCTGTTA ATTCCAGAGT TAGGTACAGG
AGGGCTAACG CTGAAAAATA TGCAGAAATC ATAAAAAAGG TCTATGATGG GGCTTCCTCA
AATATCTTAG TCTTCTTTCC AAGCTATGAT TTTAAGAGTG AGGTGAAGAA GTACCTTAAC
GGTTTACCCA TGTTGGAGGA GAGTAAGAGG ATAACTCATG AGGAAATACT GGAGCTTATG
AAGGAGGGGA AATATGCGGT ACTTTTGGTT ATGAGGGCAA AGGAAAGTGA GGGAGTGGAG
TTTAGAGATG AGGGTAATAG GAACTTATTT AGTGATATGG TGCTTGCTGG TTTGCCTTAT
CCAGATGTCA GTGATGCTTT AATTAAGAGA AGAATTGAGA AACTATCTAA GGTTACTAAG
AAGACTGAGG AGGAAGTGGC AAAGGAACTA ACTTTGATTA CTATAAAGCA GACTATTGGC
AGGGCTTTTC GTGACCCTAA CGATTATGTC AAGATTTACC TTTGTGATTC AAGATACAGG
GAGTACTTTT CTGACTTGGG TATTTCCGAA AAAGAGATTA AGCTTTTTGC TTAG
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| Protein sequence | MEITLREWQK QKFDEALNAL KTKNTLLLNV TTGAGKTLFT LLLGKALHKK ILFLTRTHSE
FEAVRREAER LGLKVAYLFG KNSVCPFATD DVKPEDIECR ECSLRDKIKD LSGLKPFQIL
QLSKDASDFC PYHSLRALIT KVDVIVASYM YFFNPFLRRK IVCGSQDCIK PDELLVIVDE
AHNLINGDEW FSKKIGKKTV NNALKELDEV ESNTNNDLGD VRAFLVELGK FLENIVDDGG
CRELPLYPKP SAEVLLQIHK ASLSYLNMIK GPIKRSYLRS VYDFFNTEGD TFNCNGKLMV
IPSDTIEMIK ESFNFADKRV LMSGTLPDLG LEGYRINVEV RLGKAEYYYC SSVNSRVRYR
RANAEKYAEI IKKVYDGASS NILVFFPSYD FKSEVKKYLN GLPMLEESKR ITHEEILELM
KEGKYAVLLV MRAKESEGVE FRDEGNRNLF SDMVLAGLPY PDVSDALIKR RIEKLSKVTK
KTEEEVAKEL TLITIKQTIG RAFRDPNDYV KIYLCDSRYR EYFSDLGISE KEIKLFA
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