| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_4225 |
|---|
| Symbol | |
|---|
| ID | 6311556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 4517944 |
|---|
| End bp | 4520013 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642652912 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001926870 |
|---|
| Protein GI | 188583425 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCGG TCGAGTCCAC CGCGGGAGGC CCCGCCCAGC CGGACGTCCT AGGCCGCTCG
ATGGATGCGA TCAGCCTGAT CGGGCCAACG CCGGGTTTCC GCTCGGATCG GGCCGTGAGC
GCTACCAAGA CCGACACCCG CCAGCTCGAT GTCCCCCAGG TCGTGACGGT CGTACCGCGC
GAACTCATCA CCGACATCAA CGCCACCCGC GTCGACCGGG CCTTCGACTA CGTGCCTGGG
CTGACCCAGA CCAACAATTT CGGGGGGCTC GGTACCTTCG CCTACGCCAT CCGCGGCGTG
ACCACGGCCG AGATCTTCCG GAACGGGCTC GCGGCCAACC GCGGCGGTCC GCCCCCGCTC
ATCGACACCC AGAACATCGA GCGCATTGAG GTGCTCAAGG GGGCCGGCGG CGCCCTGTTT
GGACGCAGCG ACCCGGGTGG CCTCGTCAAC ATCGTCACCA AGCAGCCCAC CACGATCCGC
TTCGTCGAGA TGGGCGGCCT ATGGGGCTCG TTCGAGCAGT TCCGCGGCAC CATCGATTCC
GGTGGGGCGC TCAACGACGA GAAGACGCTG CTCTACCGCT TCAATTTCGC CGGGGGTAGC
CAGAACAGTT ACCGCGACTT CGTCGGCGAC GACCGGCTTT TCATCGCGCC GGTCCTGAGC
TGGCAGATCA CGCCCGACAC CAAGCTGACG GTCGAGGCCG CCATCACCCG CAACAACGTC
GTCGTCGACC GTGGTGTTGT CGCTGTGAAC AAGCAACTCG GGTTCGTGCC GATCAGCCGT
TTCTTGGGTG AGCCCGGGCA GGTGAGCCGC CAGAGCGACG CGGTGCTCCA GGTGCGCCTC
GACCACCGCT TCGACGCCGA TTGGCAGATG CGGCTCGCCA CGCAGTTCAA CACCGGCACC
CTGAACGGCG AGAGCGCCGA GGGTCGCGGC CTCCTGTCCG ACAACCGTAC GGTCATCCGC
GACCGCAACT TCCGCGACTA CAGTTACGAC TCGGTCATCG GTCAGGCCGA GCTCGTCGGC
CGCTTCCGAA CCGGCGAGGT CGGCCACACC CTGCTCCTCG GCTTCGACTG CGAGGACTTC
GACAACCGGC AGCTCTACCT GCGCTCGAAC TTCAACACGT TCCCGTACGC GATCGACATC
TACAACCCGC GCTACGGCCA GCCCCTGCCG CCGCTGACGC GCGCCTCCAA CACCCTGGAG
AGCGTGACCG ACACCGGCTT TTACGCCCAG GACCTGATCG GCCTCGCGCC GCAGTGGAAA
GCACTGGCCG GCGTTCGCTT CGACCTGTTC GAGCGCTCCT TCAAGCAGCG CATCGGAGGC
AACAGCGCCG AGCAGACGCG GGCGGCCGCC TCGCCGCGGG CCGGGCTCGT CTACCAGCCC
ATCCCGGGGC TCGCGCTCTA CGCCAACGTC AGCACCAGCT TCCGGCCGAA CATCGGCACG
GACGCGGGGC TCGGCGCAGG GTCGCGCGCC TTCGAGCCGG AGACCGGCCT CGGCTACGAG
GGGGGAGCGA AGGTCGAGCT CTACGGTGGC GCACTCCTAC TGACCGGTGC GGCCTTCCGC
ATCGACCGAG AGAACGTGCT CACCGCCGAC CCCAGCAACA GCGGCTTCCA GATCACGGCC
GGCGGCGTGC GCAGCCAAGG CTTCGAGTTC ACTGCCGCCG GCCAGCTTAC CCCAGAGCTA
CGCATTATCG GCGGCTACAC CTTCACCGAT GCCTTCATCA CCAAGGACAA CGTGCTCCCG
GTCGGTGCCC CGCTGCTCAA CATCCCGGAG CACAGTGGCA CGATGCTGGC CGTCTACGAG
GTGCAGAGCG GCCCCCTGCG GGGCCTCGGC ATCGGCGGCG GGGTGCGTGC GGCCGGCGAG
CGCGCGGGGG ATTCGTCCAA TTCAGGGTTC AAGCTCCCAA CCTACGTCGT GGCCGACGCG
CTGGGCTACT ATGAGTACGA GAGCTTCCGC TTCGGCCTGA ACGTGGAGAA CGTCTTCGAC
ACCACCTACT ATGTCGGCTC CGTTAGCCAG TTTCGCGTCG ACACCGGCTC GCCCCGCCGC
ATCACCGGCT CCCTGCTGGT TCGGTTCTGA
|
|---|
| Protein sequence | MISVESTAGG PAQPDVLGRS MDAISLIGPT PGFRSDRAVS ATKTDTRQLD VPQVVTVVPR
ELITDINATR VDRAFDYVPG LTQTNNFGGL GTFAYAIRGV TTAEIFRNGL AANRGGPPPL
IDTQNIERIE VLKGAGGALF GRSDPGGLVN IVTKQPTTIR FVEMGGLWGS FEQFRGTIDS
GGALNDEKTL LYRFNFAGGS QNSYRDFVGD DRLFIAPVLS WQITPDTKLT VEAAITRNNV
VVDRGVVAVN KQLGFVPISR FLGEPGQVSR QSDAVLQVRL DHRFDADWQM RLATQFNTGT
LNGESAEGRG LLSDNRTVIR DRNFRDYSYD SVIGQAELVG RFRTGEVGHT LLLGFDCEDF
DNRQLYLRSN FNTFPYAIDI YNPRYGQPLP PLTRASNTLE SVTDTGFYAQ DLIGLAPQWK
ALAGVRFDLF ERSFKQRIGG NSAEQTRAAA SPRAGLVYQP IPGLALYANV STSFRPNIGT
DAGLGAGSRA FEPETGLGYE GGAKVELYGG ALLLTGAAFR IDRENVLTAD PSNSGFQITA
GGVRSQGFEF TAAGQLTPEL RIIGGYTFTD AFITKDNVLP VGAPLLNIPE HSGTMLAVYE
VQSGPLRGLG IGGGVRAAGE RAGDSSNSGF KLPTYVVADA LGYYEYESFR FGLNVENVFD
TTYYVGSVSQ FRVDTGSPRR ITGSLLVRF
|
|---|
| |