| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_1969 |
|---|
| Symbol | |
|---|
| ID | 6312728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 2106934 |
|---|
| End bp | 2107806 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 642650693 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001924667 |
|---|
| Protein GI | 188581222 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.25912 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0106944 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGCC ATGGCCGCTA CGCCTATTCC GCCCTGCCGG AGCGGCCGGT CTACGACTGG
CCGGAGGGCA AGCGCCTTGC GGTCTACCTC GCCCTCAATC TCGAAACCTT CGATTTCGGC
GCCGGCCTGG GCGCCGAGCT GGCGCCGGGC GGGCCGCAGC CCGACGTGCT CAACTACGCG
TGGCGCGACT GGGGCAACCG GGTCGGCGCG TGGCGCCTGC GCGACATGCT CGACGACCTA
CGGATGCCCG CGAGCATCCT CGTCAACAGC CGGATCTACC GGGACTGTCC GGGCCTGATC
GAGGCGTTCC GGGCCCGCGG CGATGAGATC GTCGGGCACG GCCGCACCAA TGCCGAGCGG
CAGGGCACCC TCTCGGAAGC CGAGGAGCGC GCCCTGATCG CCGAGGCGAC CGCGGTGCTG
ACGCGGGAGG AGGGCAGGGC GCCGGGCGGA TGGCTCGGCC CCTGGATCTC GCAATCGCGG
ATCACGCCGG ATCTGCTGGC GGAGGCGGGC TACCGCTACC TGCTCGATTG GTGCCACGAC
GACCAGCCGA CTTGGTTCGC GACGCGCAAC GGTGGGCGCA TCCTCTCGGT GCCCTATCCG
CAGGAGTTGA ACGACATCCC GGCCATCGTC GCCCGCAAGG AGACGGGGCG GGCCTTCGCC
GAGGCGATCA CGGATGCCTT CGAGGAGATG CTGGAGCAGT CGCGCCGCGC GCCGCTCGTG
ATGGGCATCG CCCTGCACCC TTACATCGTC GGACAGCCGC ACCGCTTGCG TCCCCTGCGG
CAGGCACTCG AACGGATCGC CGGGCAGCGG GACGCGGTCT GGCTCACCAC GGCCGGCGCG
ATCGCGGCGC ACGCCGCCGA ACGGGCGCCG TAG
|
|---|
| Protein sequence | MAGHGRYAYS ALPERPVYDW PEGKRLAVYL ALNLETFDFG AGLGAELAPG GPQPDVLNYA
WRDWGNRVGA WRLRDMLDDL RMPASILVNS RIYRDCPGLI EAFRARGDEI VGHGRTNAER
QGTLSEAEER ALIAEATAVL TREEGRAPGG WLGPWISQSR ITPDLLAEAG YRYLLDWCHD
DQPTWFATRN GGRILSVPYP QELNDIPAIV ARKETGRAFA EAITDAFEEM LEQSRRAPLV
MGIALHPYIV GQPHRLRPLR QALERIAGQR DAVWLTTAGA IAAHAAERAP
|
|---|
| |