Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_B0401 |
Symbol | |
ID | 4788029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008826 |
Strand | + |
Start bp | 353956 |
End bp | 356511 |
Gene Length | 2556 bp |
Protein Length | 851 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640092833 |
Product | DNA topoisomerase |
Protein accession | YP_001023411 |
Protein GI | 124262941 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0152197 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0000578583 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGGAAAAC TCCTGATCAT TGCCGAGAAG CCCTCTGTCG CTCGCGACAT CGCTGTGGCC CTCGGCGGCT TTGCCAAGAA CGATCGCTGG CTCGAGAGCA ACGACGCGGT CGTGTCATCG GCTCTTGGCC ACCTGGTCGA GATCTACGCG CCCGAGGCGG AGACGACCGG TCGTGACCTC TCCAGTCTGC CCGTGATCCC CGCTGCCTTC GCGCTGCGCG AGATCCCTGG GCGTGAAGAC CAGTTCCGGC TGCTGAGCAA GCTGCTCAAG CGGCCCGACA TCGACGCCAT CGTCAACGCC TGCGACGCGG GGCGCGAGGG CGAGCTGATC TTCCGCCTGA TCTATGAGCA CGCGGGCTGC CGCAAACCGA TCAAGAGGAT GTGGCTGCAG TCGATGACCG CGGACGCGAT CCGCGATGCC TTCCGCGGCA TGCGGCCGGG GAAGGACTTC GACGCGTTGG CCGCAGCTGC GCGCAGCCGT AGCGAGGCCG ACTGGATCGT TGGCATCAAC GGCTCGCGCG GCATCACTCG CCTGCGCGAA CGCCAGACTT CCGGGCCCGG GTCAATGAAC GCCGGACGCG TGCAGACGCC CACGCTGGCG ATCGTCGTGG ACCTGGAGAA CCGCCTGCGC AACTTCGTGG CGAAGGACTA CTGGGAAGTG CATGGCACCT TCTCGGTGGC CGCCGGCACC TACATCGGCC GCTGGTTCGA CCCGAACGCG AAGACCAACG GCTCGGACGA TCCGCCGGAG CGGCTGTGGG ACCGCGCGCG CGCACAGGCC ATCGTGGCCA AGTGCGCCGG CCAGGACCCG AGCGACGTTC AGGAGGAATC GAAGCCCTCG CTGTCGCATC CGCCCAAGCT CTACGACCTG ACCTCGCTGC AGCGCGAGGC GAACAAGCGC TTCGGTCTGT CTGCCAAGCG CACGCTTGAC ATCGCGCAGG CCCTGTACGA GAAGCACAAG GTCACCACCT ACCCGCGGAC GAACTCGTCG GCCTTGCCCG AGGACTACGT GCCCAAGGCG ATCGGCACGA TGCGCGACTT CGCCGGCACG CCCTTCGAGA AGCACGCCAC GAAGGCGCTC GACCAGGGCT GGGTGCGGCC CGACAAGCGC ATCTTCAACA ACGCCAAGAT CACTGACCAC TTCGCGATCA TCCCCACCGG CAAGAAGCCC GAAGGACTCA GCGCCGAGGA GGCCAAGGTC TACGAGATGG TGGCCAAGCG ATTCATTGCC GCCTTCTACC CGCCGGCCGA GTACCGCGCC ACGACGCGCA TCACGACCGT GGCCAGCGAG CTGTTCAAGT CGACCGGCCG CGTACTGATC CACCAGGGCT GGCTCGAGGT CTACGGCGCC AGCCTGGACG ATGACGACAA GACGCCGGCG CTGACCGAGT TCGTGCCGGG CGAGGCCGTC AAGACCGACA AGATCGAGCT CAAGACGCTC AAGACCAAGC CGCCGGTGCG CTTCACGGAA GCCACGCTGC TGGGCGCGAT GGAGAACGCC GGCAAGCTGG TCGACGAGGA CGACCTGCGC GACGCCATGA AGGAATGCGG CCTGGGCACG CCGGCCACGC GCGCGGCGAT CATCGAAGGC CTGCTCGCCG ACAAGGACGG CGCCGGACGC GCCAAGGAGC CCTACCTGAC TCGGGAGGGC AAGCAGCTCG TCCCGTCGCA GAAGGGCATG GACCTGATCG CCTTCCTGAA CGCCAACGGC GTGCAGTCTC TGACGTCGCC GAAGATGACC GGCGACTGGG AGCAGAAGCT GCTCAAGATG GAGCAGGGTG CCTATGCGCG CGACGCCTTC ATGGCGGAGA TCTCCACGCT GACCCGCGAC CTGATCGACG TCGTGCGCAA ACAGGCGGCG CTGGTCAAGC TGCCGACCAC GAACACGCCG TGCCCCAAGT GCGGCGGCGC GCTCGGCGTC GGCCCCCGGG TCATCGAGTG CCAGGCCGCC TGCGGCTTCA CGCTGTGGCG CACGATCGCA GACCGCGCGC TGTCGATGCC GGAGGTCGAG AAGCTGCTGG CCGAGCGCGA GCTGGGCCCT CTCGAGGGCT TCCTGAGCCG ATCGAAGAAG CGCTTCACCG CTGGCCTGCG CATGAACGAC GAGTTCAAGA TCGAGTTCTC GTTCGACAAC GCGGCCGTCA CTACCGATGC CAGCGGGAAC GAGGTGACAT GCCCGAAGTG CAGCCAGAGC ATGCGCCGCA TCAGCGGCAA GAACGGCTAC TTCTGGTCCT GCTCCGACCG CGAGTCCTGC AAGACGACCC TGGACGACGT CGACGGCAAC CCGGCCGAGC CGCCGAAGAC CAAGCCGTGC CCCAGCTGTC AGCGGCCCAT GTTCCTGCGC AGCGGCGGCC GCGGGCCCTT CTGGGGCTGC AGCGGCTACC GCGACGGCGA CTGCAAGACG ATCGTTGAAG CGGAGGAGGG CGAGGTCGCG CCCCCGCCCC GCGGCGGCGG CAAGGCCAAG CCTGGCGCGA AGGCGCGCGG TAAGCCCGCC GGAGCCAAGA CCACCGGAGC ACGTCGCCCT GCGGCCGGCT CTTCCCCGAA GGGCCACTTC CTCTGA
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Protein sequence | MGKLLIIAEK PSVARDIAVA LGGFAKNDRW LESNDAVVSS ALGHLVEIYA PEAETTGRDL SSLPVIPAAF ALREIPGRED QFRLLSKLLK RPDIDAIVNA CDAGREGELI FRLIYEHAGC RKPIKRMWLQ SMTADAIRDA FRGMRPGKDF DALAAAARSR SEADWIVGIN GSRGITRLRE RQTSGPGSMN AGRVQTPTLA IVVDLENRLR NFVAKDYWEV HGTFSVAAGT YIGRWFDPNA KTNGSDDPPE RLWDRARAQA IVAKCAGQDP SDVQEESKPS LSHPPKLYDL TSLQREANKR FGLSAKRTLD IAQALYEKHK VTTYPRTNSS ALPEDYVPKA IGTMRDFAGT PFEKHATKAL DQGWVRPDKR IFNNAKITDH FAIIPTGKKP EGLSAEEAKV YEMVAKRFIA AFYPPAEYRA TTRITTVASE LFKSTGRVLI HQGWLEVYGA SLDDDDKTPA LTEFVPGEAV KTDKIELKTL KTKPPVRFTE ATLLGAMENA GKLVDEDDLR DAMKECGLGT PATRAAIIEG LLADKDGAGR AKEPYLTREG KQLVPSQKGM DLIAFLNANG VQSLTSPKMT GDWEQKLLKM EQGAYARDAF MAEISTLTRD LIDVVRKQAA LVKLPTTNTP CPKCGGALGV GPRVIECQAA CGFTLWRTIA DRALSMPEVE KLLAERELGP LEGFLSRSKK RFTAGLRMND EFKIEFSFDN AAVTTDASGN EVTCPKCSQS MRRISGKNGY FWSCSDRESC KTTLDDVDGN PAEPPKTKPC PSCQRPMFLR SGGRGPFWGC SGYRDGDCKT IVEAEEGEVA PPPRGGGKAK PGAKARGKPA GAKTTGARRP AAGSSPKGHF L
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