| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3451 |
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| Symbol | rpoB |
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| ID | 4786325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | - |
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| Start bp | 3659144 |
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| End bp | 3663271 |
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| Gene Length | 4128 bp |
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| Protein Length | 1375 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640092029 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001022639 |
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| Protein GI | 124268635 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.335108 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.221972 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAAG CAACCCCCTA CAGCTACACC GAGCGCAAGC GCATCCGGAA GAGTTTCGGA
AAGCGCGAGA ACGTCTTGGG CGTGCCCTAT CTGCTGACGA TGCAGAAGGA TTCCTACGTC
GCCTTCCTGC AGAAGGACGT GCCGCCCCAA AAGCGCAAAC CGGAGGGCTT GCAGGCCGCC
TTCCTCTCCG CCTTCCCGAT CGTCTCGCAC AACGGGTTCG TGGAGATGAA GTACATCGAG
TTCAACATGG CCAAGCCCGC GTTCGACACG CGGGAATGCC AGCAGCGCGG CCTGACCTAC
GCCGCCGCGG TGCGCGCCAA GCTGCAGATG ATCATCTATG ACCGCGAAAC CTCGACCTCG
CAGTCGAAGG TGGTCAAGGA GATCAAGGAG CAGGAGGTCT ACATGGGTGA AGTGCCCCTG
ATGACCGACT ACGGCTCCTT CATCGTCAAC GGCACCGAGC GCGTGATCGT TTCGCAGCTG
CATCGCTCGC CGGGCGTGTT CTTCGAGCAC GACAAGGGCA AGACCCACAG CTCGGGCAAG
CTGCTGTTCA GCGCCCGCAT CATTCCTTAC CGCGGCTCGT GGCTGGACTT CGAGTTCGAC
CCGAAGGACA TCCTGTACTT CCGCGTCGAC CGCCGTCGCA AGATGCCGGT GACGATCCTG
CTGAAGGCCA TCGGTCTGAA CCCGGAGCAG ATCCTCGCGA ACTTCTTCGT GTTCGACAAC
TTCCGCCTGA TGGACTCGGG CGCGCAGATG GAGTTCGTGG CCGACCGGCT GCGCGGCGAG
ATCGCCCGCT TCGACCTGAC CGACAAGGCG GGTGCCGTGA TCGTCGAGAA GGACAAGCGC
ATCACGGCGC GCCACACGCG TGCGCTGGAA GCGTCGGGCA CCAGCTTCAT CAGCGTGCCG
GAAGACTTCC TCGTCGGCCG CGTGCTGGCG AAGAACATGG TCGATGCCGA CACCGGCGAG
ATCATCGCGA AGGCCAACGA CGAACTGACC GATTCGCTGC TGAAGAAGCT GCGCACGGCC
GGCATCAAGG ACATCCAGTG CCTGTACACG AACGAGCTCG ACATGGGCGC GTACATCTCG
CAGACGCTGG CCTCCGACGA GACCGCCGAC GAGCTGGCCG CTCGCGTGGC GATCTACCGC
ATGATGCGCC CCGGCGAGCC GCCGACCGAG GACGCGGTGC AGGCCTTGTT CAACCGCCTG
TTCTACAGCG AGGACACCTA CGACCTGTCG CGCGTCGGGC GGATGAAGTT CAACGCCCGC
GTTGGGCGTG ACACCGCCGA AGGCCGCATG GTGCTGGCCA ACGACGACAT CCTCGACGTG
GTCAAGATCC TGGTCGAGCT GCGCAACGGC CGCGGCGAGG TGGACGACAT CGATCACCTC
GGCAACCGCC GCGTGCGCTG TGTCGGTGAG CTGGCCGAGA ACCAGTACCG CTCGGGTCTG
GCGCGCATCG AGAAGGCCGT GAAGGAACGT CTCGGCCAGG CCGAGACCGA GGCGCTGATG
CCGCACGACC TGATCAACTC CAAGCCGATC TCCGCGGCGC TGAAGGAGTT CTTCGGGGCG
AGCCAGCTGT CGCAGTTCAT GGACCAGACC AACCCGCTGT CCGAGATCAC GCACAAGCGT
CGCGTCTCGG CCCTGGGCCC GGGTGGCCTG ACCCGCGAGC GCGCCGGTTT CGAGGTGCGC
GACGTGCACC CGACCCATTA CGGCCGCGTC TGCCCGATCG AGACCCCGGA AGGTCCGAAC
ATCGGCCTGA TCAACTCGCT GGCGCTGTAC GCCCAGCTCA ACGAGTACGG GTTCCTCGAG
ACGCCGTACC GCCGCGTGAT CGACAGCAAG GTCACCGACC AGATCGACTA CCTGTCGGCC
ATCGAGGAAG GCAAGTACGT CATCGCGCAG GCCAATGCCG GTCTCGACAA GGACGGCAAG
CTGATCGACG AGCTGGTGTC GGCCCGCGAG AGCGGCGAGT CGGTGCTGAC CTCACCCGAG
CGCATCCAGT ACATGGACGT GGCGCCGACG CAGATCGTGT CGGTGGCGGC CTCGCTGGTG
CCTTTCCTCG AGCACGACGA TGCGAACCGC GCGCTGATGG GCGCGAACAT GCAGCGCCAG
GCCGTGCCGG TGCTGCGCCC CGAGAAGGCC TTTGTCGGCA CCGGCGTCGA GCGCGTCTCG
GCGGTCGACT CGGGCACGGT TGTCACGGCC AAGCGGGGCG GCGTGGTCGA CTACATCGAC
ACCAACCGCA TCGTGATCCG CGTCAACGAC GCGGAAACGG TGGCGGGCGA GGTCGGCGTC
GACATCTACA ACCTGATCAA GTACCAGCGC TCGAACCAGA ACACCAACAT CCACCAGCGC
CCGATCGTCC AGCGCGGTGA CCAGGTGGGT GCCGGCGACG TGATCGCCGA CGGCGCGTCG
ACCGACATCG GTGAACTGGC GCTCGGCCAG AACATGCTGG TCGCGTTCAT GCCCTGGAAC
GGCTACAACT TCGAGGACTC GATCCTGATC TCGGAGCGCG TGGTCGCCGA CGACCGCTAT
ACCTCGATCC ACATCGAGGA ACTGGTGGTG ATGGCGCGTG ACACCAAGCT GGGCTCGGAG
GAAATCACCC GCGACATCCC GAACCTGTCC GAGCAGCAAC TCGGCCGGCT CGACGAGTCG
GGCATCGTCT ACATCGGTGC TGAGGTGAAC CCGGGCGACG TGCTGGTCGG CAAGGTCACG
CCGAAGGGCG AGACCACGCT GACGCCGGAA GAGAAGCTGC TGCGCGCGAT CTTCGGCGAG
AAGGCGTCCG ACGTGAAGGA CACCTCGCTG CGCGTGGACC AGGGCACCAA CGGCACCGTG
ATTGATGTGC AGGTGTTCAC CCGCGAAGGC ATCCAGCGCG ACAAGCGCGC CCAGCAGATC
ATCGACGACG AGCTCAAGCG CTTCCGCCTG GACCTGAACG ACCAGCTGCG CATCGTCGAG
GCCGACGCCT TCGACCGGAT CGAGAAGCTG CTGGCCGGCA AGACGGCCAA TGGCGGTCCG
AACAAGCTCG CCAAGGGCAC GCCGATCGAC AAGGCCTACC TGGCGAGCGT CGACAAGTAC
CATTGGTTCG ACATCCGCCC GGCGGACGAC GACATCGCCA ACCAGCTCGA GTCGATCAAG
AACTCGCTCG AGCAGACGCG CCACAGCTTC GACCTCGCCT TCGAGGAGAA GCGCAAGAAG
TTGACGCAGG GCGACGAACT GCCGGCCGGC GTTCTGAAGA TGGTCAAGGT CTACCTGGCC
GTCAAGCGCC GCCTGCAGCC GGGCGACAAG ATGGCTGGCC GCCATGGCAA CAAGGGCGTG
GTCTCCAAGA TCGTTCCGGT CGAGGACATG CCCTACATGG CCGACGGCAC GCCGTGCGAC
ATCGTGCTCA ACCCACTGGG CGTGCCGTCG CGGATGAACG TCGGACAGGT GCTGGAAGTG
CACCTGGGCT GGGCCGCCAA GGGCATCGGC CAGCGCATCG GCGACCTGCT CCAGCAGGAG
GCAAAGATCG CCGACGTGCG CAAGTTCCTC GACGAGCTGT ACAACAAGTC GGGCGGCAAG
TCGGAGGGCC TGAACGGCCT CAGCGATGCC GAGATCACCG AAATGGCGAC CAATCTTGCG
CAGGGCGTGC CGTTCGCGAC GCCGGTGTTC GACGGCGCCA CCGAGGAGGA GATCCGCGCG
ATGATGCACC TCGCCTATCC GGACGAGATC GCCGCGGCCA AGGGGCTGAA CGCCACCCGC
ACCCAGGCGA CGCTGCACGA CGGCCGCACC GGCGACGCCT TCGAGCGTCC GGTCACCGTG
GGCTACATGC ACGTGCTGAA GCTGCACCAC CTGGTCGACG ACAAGATGCA TGCGCGCTCC
ACCGGCCCCT ATTCGCTCGT CACGCAGCAG CCGCTGGGCG GCAAGGCGCA GTTCGGCGGC
CAGCGTTTCG GCGAAATGGA AGTCTGGGCG CTGGAAGCCT ATGGCGCGAG CTATGTGCTG
CAGGAAATGC TGACCGTGAA GTCGGACGAC GTGAACGGGC GCACCAAGGT GTACGAAAGC
ATCGTCAAGG GCGAGCACGC GATCGAGGCC GGCATGCCGG AGTCGTTCAA CGTGCTGGTG
AAGGAAATTC GTTCGCTCGG CATCGACATC GAGCTCGAGC GCAACTAA
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| Protein sequence | MAQATPYSYT ERKRIRKSFG KRENVLGVPY LLTMQKDSYV AFLQKDVPPQ KRKPEGLQAA
FLSAFPIVSH NGFVEMKYIE FNMAKPAFDT RECQQRGLTY AAAVRAKLQM IIYDRETSTS
QSKVVKEIKE QEVYMGEVPL MTDYGSFIVN GTERVIVSQL HRSPGVFFEH DKGKTHSSGK
LLFSARIIPY RGSWLDFEFD PKDILYFRVD RRRKMPVTIL LKAIGLNPEQ ILANFFVFDN
FRLMDSGAQM EFVADRLRGE IARFDLTDKA GAVIVEKDKR ITARHTRALE ASGTSFISVP
EDFLVGRVLA KNMVDADTGE IIAKANDELT DSLLKKLRTA GIKDIQCLYT NELDMGAYIS
QTLASDETAD ELAARVAIYR MMRPGEPPTE DAVQALFNRL FYSEDTYDLS RVGRMKFNAR
VGRDTAEGRM VLANDDILDV VKILVELRNG RGEVDDIDHL GNRRVRCVGE LAENQYRSGL
ARIEKAVKER LGQAETEALM PHDLINSKPI SAALKEFFGA SQLSQFMDQT NPLSEITHKR
RVSALGPGGL TRERAGFEVR DVHPTHYGRV CPIETPEGPN IGLINSLALY AQLNEYGFLE
TPYRRVIDSK VTDQIDYLSA IEEGKYVIAQ ANAGLDKDGK LIDELVSARE SGESVLTSPE
RIQYMDVAPT QIVSVAASLV PFLEHDDANR ALMGANMQRQ AVPVLRPEKA FVGTGVERVS
AVDSGTVVTA KRGGVVDYID TNRIVIRVND AETVAGEVGV DIYNLIKYQR SNQNTNIHQR
PIVQRGDQVG AGDVIADGAS TDIGELALGQ NMLVAFMPWN GYNFEDSILI SERVVADDRY
TSIHIEELVV MARDTKLGSE EITRDIPNLS EQQLGRLDES GIVYIGAEVN PGDVLVGKVT
PKGETTLTPE EKLLRAIFGE KASDVKDTSL RVDQGTNGTV IDVQVFTREG IQRDKRAQQI
IDDELKRFRL DLNDQLRIVE ADAFDRIEKL LAGKTANGGP NKLAKGTPID KAYLASVDKY
HWFDIRPADD DIANQLESIK NSLEQTRHSF DLAFEEKRKK LTQGDELPAG VLKMVKVYLA
VKRRLQPGDK MAGRHGNKGV VSKIVPVEDM PYMADGTPCD IVLNPLGVPS RMNVGQVLEV
HLGWAAKGIG QRIGDLLQQE AKIADVRKFL DELYNKSGGK SEGLNGLSDA EITEMATNLA
QGVPFATPVF DGATEEEIRA MMHLAYPDEI AAAKGLNATR TQATLHDGRT GDAFERPVTV
GYMHVLKLHH LVDDKMHARS TGPYSLVTQQ PLGGKAQFGG QRFGEMEVWA LEAYGASYVL
QEMLTVKSDD VNGRTKVYES IVKGEHAIEA GMPESFNVLV KEIRSLGIDI ELERN
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