| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3120 |
|---|
| Symbol | nikB |
|---|
| ID | 4786633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 3321107 |
|---|
| End bp | 3322090 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640091691 |
|---|
| Product | IM pore protein |
|---|
| Protein accession | YP_001022308 |
|---|
| Protein GI | 124268304 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0682288 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0671441 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCCT TCCTGGTTCG TCGCCTGCTC CAAGCCGTGA TCGTGATGCT GGCCGTGGCC
TTCATCTCGT TCATGCTGTT CCAGCACGTC GGCGATCCGG TGACCCATCT GCTCGGGCAG
GACGCGACGC CCGAGCAGCG CACGCAGTTG CGCGCCGACC TCGGCCTGGA TCGCTCCGTG
CCCTGGCAGT TCGCGCGCTT CGTCGGCAAC GCCGTGCGGG GTGACTTCGG ACTGAGCCTG
CGCCAGGGAC GCAAGGTGTC GACCTTGATC GCCGAGCGCT TGCCGGCGAC GCTGGAACTT
GCGATCACGG CTGCGGTGCT CGCCCTGGGG ATCGGCGTGC CGATGGGCGT GATCGTGGCG
CTGCGGCGGG GCAGCGTCTT GTCTCAGCTG CTGATGACGG TGTCGCTTCT GGGCGTCTCG
CTGCCCACTT TCCTGATCGG CATCCTGCTG ATCCTGGTGT TCTCCGTCGG CCTGCACTGG
CTGCCGAGCT TCGGCCGCGG CGAGGTGCTG AGCATCGGCG GCTGGACGAG CGGCTGGTTC
ACCGTCAGCG GCTGGCAGCA CCTGGTGCTG CCGTCCATCA CGCTCGCGGT GTTCCAGCTT
GCGCTGATCA TGCGGCTGGT GCGCGCCGAG ATGCTCGAGG TGCTGCGCAG CGACTACATC
CGCTTCGCGC GGGCGCGTGG CCTGAGCGAT CGCGCGGTGC ACTTCGGCCA TGCCCTGAAG
AACACGCTCG TGCCGGTGAT CACGATCACC GGGCTGCAAT TGGGCTCACT GATCGCGTTT
GCGATCATCA CCGAGACGGT GTTCCAGTGG CCGGGTATGG GCCTGCTGTT CATCCAGGCC
GTGAGCTTTG CCGACGTGCC GGTGATGGCG GCCTACCTGT GTCTCGTCGC GCTGATCTTC
GTGGCGATCA ATCTGGCTGT CGACCTGCTC TACTTCGTGG TCGATCCGCG CCTGCGCCCT
GATCGCGAAG TCGCGCATGG GTGA
|
|---|
| Protein sequence | MLAFLVRRLL QAVIVMLAVA FISFMLFQHV GDPVTHLLGQ DATPEQRTQL RADLGLDRSV
PWQFARFVGN AVRGDFGLSL RQGRKVSTLI AERLPATLEL AITAAVLALG IGVPMGVIVA
LRRGSVLSQL LMTVSLLGVS LPTFLIGILL ILVFSVGLHW LPSFGRGEVL SIGGWTSGWF
TVSGWQHLVL PSITLAVFQL ALIMRLVRAE MLEVLRSDYI RFARARGLSD RAVHFGHALK
NTLVPVITIT GLQLGSLIAF AIITETVFQW PGMGLLFIQA VSFADVPVMA AYLCLVALIF
VAINLAVDLL YFVVDPRLRP DREVAHG
|
|---|
| |