| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0876 |
|---|
| Symbol | |
|---|
| ID | 4787199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 916066 |
|---|
| End bp | 917397 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640089437 |
|---|
| Product | homogentisate 1,2-dioxygenase |
|---|
| Protein accession | YP_001020073 |
|---|
| Protein GI | 124266069 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
|---|
| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0480084 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGGCG AGGACGGGAC TTCGATGCAC CACGCTCCCC TGCGCTACCA GAGCGGCTTC
GCCAACCACT TCGAGAGCGA GGCGCTGCCC GGTGCGCTGC CGGTGGGCCG CAACTCGCCG
CAGCGCTGCC CCTACGGTCT GTACGCCGAG CAGTTCAGCG CCACCGCCTT CACCGCGCCG
CGCGCCGACA ACCGCCGCAG CTGGCTCTAC CGCATCCGCC CGGCCGCGAT GCACGCACCG
TTCGAGCCGT ACGACGACGG CGGCCGGTTG GTCAGCGACT TCTCCACGCT CGCCACGCCG
CCCGATCCGC TGCGCTGGAA CCCGTTGCCG CTGCCGGCGG CGCCGACCGA CTTCGTCGAC
GGCCTCGTGA CCTGGGCCGG CCACGGCGAT GCGGGCGTGC AGGCCGGCGC CGCGGTCCAT
CTCTATGCCG CCGACCGCTC GATGGAGCAG CGCAGCTTCT GCAGTGCCGA CGGCGAGCTG
CTGATCGTGC CCCAGCTCGG CCGCCACCGC TTCGTCACCG AGCTCGGCGT GCTGGAGGTC
GAGCCGCAGG AGATCGTCGT CATCCCGCGC GGCCTGCGCT TTCGCGTCGA GCTGCCCGAC
GGCGCGGGCC GCGGCTACGT GTGCGAGAAC CACGGCGCGC CGTTTCGCCT GCCCGACCTG
GGGCCGATCG GCGCCAACGG CCTGGCGCAT GCGCGCGACT TCCTCGCGCC GGTGGCGGCC
TACGAGGACA TCGACGGGCC GCACCAGCTG GTCACCAAGT TCATGGGCCG GCTGTGGTCG
GCGGCGATGG ATCACTCGCC GCTCGACGTG GTGGCCTGGC ACGGCAACTG CGCACCGTAC
AAGTACGACC TGCGGCGCTT CAATGCCATC GGCTCGATCA GCCACGACCA CCCCGATCCG
TCGATCTTCC TGGTGCTGCA TGCGGCCTCC GACACGCCGG GCACCAGCGC CATCGACTTC
GTGGTCTTCC CGCCGCGCAT CCTGGCGATG CAGGACACCT TCCGGCCGCC CTGGTTCCAC
CGCAACGTCG CCAGCGAGTT CATGGGCCTG ATCCACGGCG TGTACGACGC CAAGGCCGAA
GGCTTCCTGC CCGGCGGCGC GAGCCTGCAC AACTGCATGA CCGGCCACGG CCCCGACGCC
GAGACCTTCG AGAAGGCGAG CCGTGCCGAC CTGTCGCAGC CCGACGTGAT CCGCGACACC
ATGGCCTTCA TGTTCGAGGC GCGCCACGTC TGGCGCCCGA CACCCCGGGC GCTGGCCTCG
CCGCTGCGGC AGGCCGACTA CGCGCGCTGC TGGCAGGGCC TGCGCCGGCA CTTCGATCCC
GCACGGCGCT GA
|
|---|
| Protein sequence | MLGEDGTSMH HAPLRYQSGF ANHFESEALP GALPVGRNSP QRCPYGLYAE QFSATAFTAP
RADNRRSWLY RIRPAAMHAP FEPYDDGGRL VSDFSTLATP PDPLRWNPLP LPAAPTDFVD
GLVTWAGHGD AGVQAGAAVH LYAADRSMEQ RSFCSADGEL LIVPQLGRHR FVTELGVLEV
EPQEIVVIPR GLRFRVELPD GAGRGYVCEN HGAPFRLPDL GPIGANGLAH ARDFLAPVAA
YEDIDGPHQL VTKFMGRLWS AAMDHSPLDV VAWHGNCAPY KYDLRRFNAI GSISHDHPDP
SIFLVLHAAS DTPGTSAIDF VVFPPRILAM QDTFRPPWFH RNVASEFMGL IHGVYDAKAE
GFLPGGASLH NCMTGHGPDA ETFEKASRAD LSQPDVIRDT MAFMFEARHV WRPTPRALAS
PLRQADYARC WQGLRRHFDP ARR
|
|---|
| |