| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0656 |
|---|
| Symbol | |
|---|
| ID | 4784783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 688624 |
|---|
| End bp | 691620 |
|---|
| Gene Length | 2997 bp |
|---|
| Protein Length | 998 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640089215 |
|---|
| Product | ribonuclease E |
|---|
| Protein accession | YP_001019853 |
|---|
| Protein GI | 124265849 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.59395 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCA TGCTGATCAA TGCCACGCAA TCGGAAGAAC GGCGCCTGGC GATCGTCGAC
GGGCAGAAAC TGCTCGACTT CGAGACCGAG ATCGAGGGGC GCGAACAGCG CAAGGGCAAC
ATCTACAAGG CCGTCGTCAC CCGCGTCGAG CCGTCGCTGG AGGCCTGCTT CGTCGACTAC
GGCGAGGACC GCCACGGCTT CCTGCCGTTC AAGGAGATCT CCAAGCAGTT CTTCAAGGAA
GGCGTGACCG TCCGCGACGC GAAGATCCAG GACGTGATCT CCAACGGCAC CGAGCTGCTG
GTGCAGGTCG AGAAGGAGGA GCGCGGCAAC AAGGGCGCGG CGCTGACCAC CTTCGTCAGC
CTGGCCGGGC GCTACCTGGT GCTGATGCCC AACAACCCGC GCGGCGGCGG CGTGTCGCGC
CGCATCGAGG GCGAGGACCG CGAGGAGCTC AAGGAGAACC TCGACCAGCT CGAGTACCCC
AAGGGCATGA GCCTGATCGC GCGCACCGCC GGCATCGGGC GCAGCGCCCC CGAGCTGCAG
TGGGACCTGA ACTACATGCT CAAGCTGTGG AGCGCCATCG ATGGCGCGGC CAAGGCGGGC
AAGGGCGCCT TCCTGATCTA CCAGGAGTCC TCGCTGGTGA TCCGTGCGAT CCGGGACTAC
TTCCACGCCG ACATCGGCGA GATCCTGATC GACACCGACG ACATCTACGA GCAGGCCCAG
CAGTTCATGA ACCACGTGAT GCCGGAATCG GCCTCGCGGG TCAAGCGCTA CAAGGATGAC
GCGCCGCTGT TCAGCCGCTT CCAGATCGAG CACCAGATCG AGACCGCGTT CTCGCGCACG
GTGAACCTGC CCTCGGGCGG CGCGATCGTG ATCGACCACA CCGAGGCGCT GGTATCGGTC
GACGTGAACT CGGCGCGCTC GACGCGCGGC TCCGACATCG AGGAGACCGC GACGCGCACC
AACCTCGAGG CGGCCGACGA GATCGCGCGC CAGATGCGGC TGCGCGACCT GGGCGGCCTG
ATCGTCGTCG ACTTCATCGA CATGGAGGAG AGCAAGAACC GCCGCGAGGT CGAGACCCGC
CTGCGCGACG CGCTGCGCAC CGACCGCGCG CGTGTGCAGT TCAGCTCGAT CAGCAAGTTC
GGCCTGCTCG AACTGAGCCG TCAGCGCCTG CGCCCGGCGC TCAGCGAAGG CAGCCACATC
ACCTGCCCGC GCTGCAACGG CACCGGCCAC ATCCGCGACA CCGAGTCTTC CGCGCTGCAG
ATCCTGCGCA TCATCCAGGA AGAGTCGATG AAGGAGAACA CCGCCGCCGT GCACGTGCAG
GTGCCGGTGG AGGTCACGTC CTTCCTGCTC AACGAGAAGC GCACCGAGAT CACCAAGATC
GAGCTGCGTC AGCGCACCAC CGTGCTGCTG GTGCCCAACA AGCACCTCGA GACGCCGAAC
TACAAGCTCG AGCGCCTGCG TCACGACGAC CCCCGTCTGG AGAACCTGCA GGCCAGCTAC
ACGATGATCG AGGAGCCGGA CGACGAGGTC GGCATCACCC GGCGCGAGAA GGCCAAGGCC
AAGCAGGAAC CGGTGATCAA AGGCGTGCTG CCTGATCTGC CCGCCCCGGT GGCCGCGCCG
AAACCGGAAC CGGTGGCCAA GGCGCCGGTG GCCGCAGCGC CGCCGGTCGT GGCGGCACCG
GTGCCTGCCA GCCGCGACGC GGGCGGCGGT GGGTTCTTCG GCTGGTTGAA GAAACTCTTC
GGCGGCGACG TGCCGCCGGC CGCCGCACCC GCGGTCAGCG CGCCTGCCGC ACAGCCGGCG
AAGCCGGCCC GTGAAGGCGG ACGCGATGGC CAGCGCGACG GGGGCCGCGG TCGCCGCGGC
GGACGCGATG GCCAGCGCGG CGAACGCACC GAAGCCCGTG GCGAACGCGG TGAACGGGGC
GAGGACCGCA ACCGCCGTGG CGGTGGTGCG GGAGAACAAC GCGACGGCCG AGGCCGCCGC
AGCGAGCGCC CGGAAGGTGC TGTCGCTGAG ACGGCCGGCC TGAGCGCCGA CCGCCCGCCG
CGCAATGAGC CGCGCCGCGG CCCGCGTCCG GAATCGGCCC CCGCATCGGC GGCCGAGGAC
CTGACACTGC CTCTGGCTGC CGAGGGCGTG GCTGCAGCCG ACGCCACGGA AAATGCGGAG
GGAGGTGAAG GCGCACGCCG CCGCCGCCGC CGCGGTGGCC GCGGTCGCGG TGAGCGTGAC
GAGGCCCGCA GCGATGCGCC CGAAGGCGCG GTCGAAGGCG CCGCCGTCGA CGCTGCACCG
AGCACCGACG AAGACAGCCT GCCGCCGCGT GCCGAAGGCG AGGCCGCACC GGACGACGAG
ACCGCCGGCG AAGGCGGCGA GCCGCGCCGC CGGCGCCGGG GCGGCCGCGG TCGCCGCGAG
CGCGGCGAGG GCGACAACGG CGCGCCGGTC GCCGCAGCGC CGCTGAGCGA TGTGGCCGGT
GGCGACGACG CTGCGGCGTC ATCCAGCGCG GCCGACACCG TCAAGCCCTG GTGGGAAGCT
ACCCCGACCG CCGAGCCCAC CGCTGCGGCA GAGCCGGCCG TCGCGGCGCC CACGCCGCCG
CAGCCCGCGG ACGTCGCGTT GCAGGCGTTG GCCGACGTGG TGTCCAGGCC TCCCGTGGCC
ACGCCGCCCG CCTCGGTGCC GGTCGCTGCA CCGGTGGTGG CGCGCGCACC GGCACCCGCG
CCGGTCGCGA TCGAACCGGT CGCCGATGCT GCGCCGCCTG CGGCTGCCGC CGCCTTGCCG
CCCTACGCGC TGCCGATCGA CGACCTCGCC GCGGTGGCCA CCAGCGCAGG CCTGCAGTGG
GTGAACTCCG ACGCGGACAA GGTTCGCGCG GTGCAGCAGG CGATGGCCGA TGCACCGAAG
CCGGTGCATG TGCCGCGCGA GCCGAAGCCG GTGGTTGCCA TCGACGACGG CCCGCTGGTG
CTGGTGGAGA CGCGCAAGGA CCTGTCGCAG ATCAAGCTGC CGTTCGAAGG CCGCTGA
|
|---|
| Protein sequence | MKRMLINATQ SEERRLAIVD GQKLLDFETE IEGREQRKGN IYKAVVTRVE PSLEACFVDY
GEDRHGFLPF KEISKQFFKE GVTVRDAKIQ DVISNGTELL VQVEKEERGN KGAALTTFVS
LAGRYLVLMP NNPRGGGVSR RIEGEDREEL KENLDQLEYP KGMSLIARTA GIGRSAPELQ
WDLNYMLKLW SAIDGAAKAG KGAFLIYQES SLVIRAIRDY FHADIGEILI DTDDIYEQAQ
QFMNHVMPES ASRVKRYKDD APLFSRFQIE HQIETAFSRT VNLPSGGAIV IDHTEALVSV
DVNSARSTRG SDIEETATRT NLEAADEIAR QMRLRDLGGL IVVDFIDMEE SKNRREVETR
LRDALRTDRA RVQFSSISKF GLLELSRQRL RPALSEGSHI TCPRCNGTGH IRDTESSALQ
ILRIIQEESM KENTAAVHVQ VPVEVTSFLL NEKRTEITKI ELRQRTTVLL VPNKHLETPN
YKLERLRHDD PRLENLQASY TMIEEPDDEV GITRREKAKA KQEPVIKGVL PDLPAPVAAP
KPEPVAKAPV AAAPPVVAAP VPASRDAGGG GFFGWLKKLF GGDVPPAAAP AVSAPAAQPA
KPAREGGRDG QRDGGRGRRG GRDGQRGERT EARGERGERG EDRNRRGGGA GEQRDGRGRR
SERPEGAVAE TAGLSADRPP RNEPRRGPRP ESAPASAAED LTLPLAAEGV AAADATENAE
GGEGARRRRR RGGRGRGERD EARSDAPEGA VEGAAVDAAP STDEDSLPPR AEGEAAPDDE
TAGEGGEPRR RRRGGRGRRE RGEGDNGAPV AAAPLSDVAG GDDAAASSSA ADTVKPWWEA
TPTAEPTAAA EPAVAAPTPP QPADVALQAL ADVVSRPPVA TPPASVPVAA PVVARAPAPA
PVAIEPVADA APPAAAAALP PYALPIDDLA AVATSAGLQW VNSDADKVRA VQQAMADAPK
PVHVPREPKP VVAIDDGPLV LVETRKDLSQ IKLPFEGR
|
|---|
| |