Gene Mpe_A0277 details

Gene Information

• Locus tag: Mpe_A0277
• Symbol: secD
• ID: 4786946
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylibium petroleiphilum PM1
• Kingdom: Bacteria
• Replicon accession: NC_008825
• Strand: +
• Start bp: 300488
• End bp: 302368
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 640088829
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001019474
• Protein GI: 124265470
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.130868
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 11
• Fosmid unclonability p-value: 0.176148
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACCGCT ACCCATGGTG GAAGTACGCG ATCCTGGCGA TCGCGCTGCT GGTCGGGCTG 
GTCTATACCT TGCCCAACTT CTTCGGTGAG GCACCTGCCG TGCAGGTGTC GAGTGGCAAG 
GCCACGCTGA AGGTCGACGC GACGGTGGTG CCGCGCGTCG AGCAGGCCTT GCAGGCGGCC 
GGACTGCAGG CCGATTTCGT GCAACTCGAC GGTGCGTCGA TCAAGGCACG CTTTCGCGAC 
ACCGATGCGC AGATCAAGGC CAAGGACGCC ATTGCCAAGG CCTTGAACCC TGACCCGGCC 
GATCCGGGCT ACATCGTCGC GCTGAACCTG CTGTCGCGTT CACCGACCTG GCTGCGATCG 
CTGCATGCGC TGCCGATGTA CCTGGGCCTC GACCTGCGCG GCGGGGTGCA TTTCCTGATG 
CAGGTCGACA TGAAGGCGGC GCTCACCAAG CGCGCCGATG TGCTGACCGG CGACATCCGC 
AGCCTGCTGC GCGACAAGAG CATCCGCCAC GCCGGCATCG CGCGTGAAGG CAACACGGTC 
ACGATCGCCT TCCGCGACGC GGCGACGCGC ACCGCCGCGC GGGCGGTGCT GACCGAGCCG 
CTGCCCGACC TGCAGTGGTC CGAGGCGGCC CGTGACAGTG AATTCACGCT GACCGGCAGC 
CTGAAGGCCG AGGCGGCGCG CCGCGTGCAG GATCAGGCCA TCAAGCAGAA CATCACCACG 
CTGCACAATC GGATCAATGA ACTCGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCGCG 
GACCGCGTGG TGGTGCAGTT GCCGGGCGTG CAGGACACGG CGAAGGCGAA GGACATCATC 
GGCCGGACCG CGACGCTCGA ACTGCGCATG GTGGACGACA GCGCCGAGGC GGCCGCCGCC 
GCGACCGGCA GCGGGCCGGT GCCGTTCGGG GCCGAGCGCT ACGTGGAGCG CGGCGGTGCC 
GCGCTGATCG TCAAGCGCCA GGTCATCCTC ACCGGTGACA GCCTGACCGA CGCGCAACCC 
GGTTTCGACG GCCAGACGCA GGAACCGGCC GTGCACCTGA CCGTGGACGC CAAGGGCGCA 
CGCATCATGC GCGACGTCTC GCGCGACAAC GTCGGCAAGC GCATGGCGAT CCTGCTGTTC 
GAGAAGGGCA AGGGCGAGGT CGTGACGGCT CCGGTGATTC GCGGTGAACT CGGCTCGCGC 
TTCCAGATCT CGGGCCGCAT GACGACGCAG GAGGCGAGCG ATACGGCGCT GCTGCTGCGT 
GCCGGTTCGC TGGCGGCGCC GATGGAGATC GTCGAGGAGC GGACCATCGG TCCGAGCCTT 
GGCGCCGAGA ACATCGACAA GGGCTTCAAC AGCGTGATCT ACGGCTTTGC CGCGATTGCC 
GCGTTCATGT GCGCCTACTA CCTGCTGTTC GGCGTGTTCT CGACCATTGC GCTGGCGGTG 
AACCTGCTGC TGCTGGTGGC GGTGCTGTCG ATGCTGCAGG CCACGCTCAC ATTGCCCGGC 
ATCGCGGCGA TCGCGCTGAC GCTGGGGATG GCGATCGACG CCAACGTGCT GATCAACGAA 
CGGGTGCGCG AGGAACTGCG CGCCGGCGCT TCGCCGCAGG CCGCGATCCA CACCGGCTAC 
GAGCGCGCCT GGGCCACGAT CTTCGATTCG AACATCACCA CGCTGATTGC GGGCGTTGCG 
CTGCTGGCCT TCGGCTCAGG TCCTGTCCGC GGCTTCGCGG TTGTGCACTG TCTCGGCATC 
CTGACCTCGA TGTTCTCCGC GGTGCTGTTC TCGCGTGGTC TGGTGAATCT CTGGTACGGG 
CGGCGCAAGA AGCTCAAGGG CGTGTCGATC GGTCAGGTAT GGCGTCCGGA CGGCGCTGTG 
CCGCCGGCGG CCCAGGCCTG A 

 

Protein sequence

MNRYPWWKYA ILAIALLVGL VYTLPNFFGE APAVQVSSGK ATLKVDATVV PRVEQALQAA 
GLQADFVQLD GASIKARFRD TDAQIKAKDA IAKALNPDPA DPGYIVALNL LSRSPTWLRS 
LHALPMYLGL DLRGGVHFLM QVDMKAALTK RADVLTGDIR SLLRDKSIRH AGIAREGNTV 
TIAFRDAATR TAARAVLTEP LPDLQWSEAA RDSEFTLTGS LKAEAARRVQ DQAIKQNITT 
LHNRINELGV AEPVIQQQGA DRVVVQLPGV QDTAKAKDII GRTATLELRM VDDSAEAAAA 
ATGSGPVPFG AERYVERGGA ALIVKRQVIL TGDSLTDAQP GFDGQTQEPA VHLTVDAKGA 
RIMRDVSRDN VGKRMAILLF EKGKGEVVTA PVIRGELGSR FQISGRMTTQ EASDTALLLR 
AGSLAAPMEI VEERTIGPSL GAENIDKGFN SVIYGFAAIA AFMCAYYLLF GVFSTIALAV 
NLLLLVAVLS MLQATLTLPG IAAIALTLGM AIDANVLINE RVREELRAGA SPQAAIHTGY 
ERAWATIFDS NITTLIAGVA LLAFGSGPVR GFAVVHCLGI LTSMFSAVLF SRGLVNLWYG 
RRKKLKGVSI GQVWRPDGAV PPAAQA