| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0260 |
|---|
| Symbol | gapA |
|---|
| ID | 4786929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 281565 |
|---|
| End bp | 282581 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640088812 |
|---|
| Product | glyceraldehyde-3-phosphate dehydrogenase |
|---|
| Protein accession | YP_001019457 |
|---|
| Protein GI | 124265453 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01532] D-erythrose-4-phosphate dehydrogenase
[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.154072 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCA AAGTTGCCAT CAATGGCTAC GGCCGCATCG GCCGCAACGT GCTCCGCGCC
CACTACGAGG GCGGCAAGAA GCACGACATC CAGATCGTCG CGATCAACGA TCTGGGCGAC
CCGAAGACCA ACGCCCACCT GACGCAGTAC GACACCGCGC ATGGCAGGTT CCCAGGCACG
GTCAGCGTCG ACGGCGACTA CATGGTCATC AACGGCGACA AGATCCGCGT GCTGGCCAAC
CGCAACCCGG CCGAGCTGCC TTGGGGCGAG CTCGGCGTGG ACGTGGTGAT GGAGTGCACC
GGCTTCTTCA CGACCAAGGA AAAGGCCTCG GCGCACCTGA AGGGCGGCGC CAAGAAGGTC
ATCATCTCGG CGCCGGGCGG CAAGGACGTG GACGCGACCA TCGTGTTCGG TGTCAACCAC
GGCGTGCTGA AGGCCACCGA CACGGTGATC AGCAACGCCA GCTGCACCAC CAACTGCCTG
GCGCCGCTGG TCAAGCCACT GCACGAGAAG ATCGGCCTGG AGTCGGGCCT GATGACCACC
ATCCACGCTT ACACCAACGA CCAGGTGCTG ACCGACGTGT ACCACGAGGA CCTGCGCCGC
GCGCGCAGCG CCACGCAGTC GATGATCCCC ACCAAGACCG GCGCCGCCGC TGCGGTGGGC
CTGGTGCTGC CCGAACTGAA CGGCAAGCTC GATGGCTTCG CGATCCGCGT GCCGACCATC
AACGTGTCGG TGGTCGACCT GACCTTCACC GCCAAGCGCG CCACGACGCT CGAGGAGGTC
AACGCCGTGC TGAAGGCCGC GGCCGAGGGC GAGCTCAAGG GCATCCTGGC CTACAACACC
GCGCCTCTGG TGAGCGTGGA CTTCAACCAC GACCCGGCGT CCAGCACCTT CGACTCGACC
CAGACCCGCG TTTCGCCGGA CGGCAAGCTC GTCAAGGTGC TGAGCTGGTA TGACAACGAG
TGGGGTTTCA GCAATCGCAT GCTGGACACC ACCGTAGCGC TGATGGCTGC CAAGTGA
|
|---|
| Protein sequence | MTIKVAINGY GRIGRNVLRA HYEGGKKHDI QIVAINDLGD PKTNAHLTQY DTAHGRFPGT
VSVDGDYMVI NGDKIRVLAN RNPAELPWGE LGVDVVMECT GFFTTKEKAS AHLKGGAKKV
IISAPGGKDV DATIVFGVNH GVLKATDTVI SNASCTTNCL APLVKPLHEK IGLESGLMTT
IHAYTNDQVL TDVYHEDLRR ARSATQSMIP TKTGAAAAVG LVLPELNGKL DGFAIRVPTI
NVSVVDLTFT AKRATTLEEV NAVLKAAAEG ELKGILAYNT APLVSVDFNH DPASSTFDST
QTRVSPDGKL VKVLSWYDNE WGFSNRMLDT TVALMAAK
|
|---|
| |