Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_A0105 |
Symbol | |
ID | 4784507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008825 |
Strand | - |
Start bp | 107874 |
End bp | 108602 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 640088652 |
Product | DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein |
Protein accession | YP_001019302 |
Protein GI | 124265298 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00328358 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.102499 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGTCGC GCCGTTCAAC CCCGTTCGCG GCCCTCGCAC GTACAAGCCC GAACCGCCGC GATGGCAGAC TGAGCAGGCC CATGCCCGAC CCCACGCCCG AACCCTCCGA CGACACGCTG ATGCAGGCCT TCGCCGGCGG CGACGCGCGC GCCTTCGAAC GGCTCTACGC ACGCCACCAC GTCGCGCTCT ACCGCTTCGT GCGCAGGCTG CTCGGCAGCG CCTGCGCGGC ACAGACCGAC GAGGTGTTCC AGGACACCTG GCTGCGCGTG ATCGACGCGC GCACCCGCTG GGCACCGCAG GGCGCGAGCT TTCGCACCTG GCTGTTCACG CTGGGCCACC ACCGCGCGGT CGATTGCCTG CGCAGGAGCG GCCGGGAGGT ATCGGTCGAC GCGCCGGGGC CCGACCCCTG GGAACCCGAC GGCGAGCCTT GGGCCCGCTG GCCGGTCGCC CACGGCGCCG ACGGGCAGGG CGTCGACGAC CAGGCCTTCT GGCGTGCGGC CGGCCAGCGC CTGCTCGACT GCCTGGATGG CCTGCCCGCC GCGCAGAAGG CGGTGTTCCT GCTGCACCAC GAGGACGGCC TGTCGCTCGC CGAACTGGCC GCCGCGCTGG AACTGGGTTT CGAGACCGCC AAGAGCCGGC TGCGCTATGC GATGAGCAAG CTGCGCACCT GCATGGGCGC CTACCTGCCC GGTGCGGGCG TGCTGACCGC GCCCGAGGGG AGCGCATGA
|
Protein sequence | MPSRRSTPFA ALARTSPNRR DGRLSRPMPD PTPEPSDDTL MQAFAGGDAR AFERLYARHH VALYRFVRRL LGSACAAQTD EVFQDTWLRV IDARTRWAPQ GASFRTWLFT LGHHRAVDCL RRSGREVSVD APGPDPWEPD GEPWARWPVA HGADGQGVDD QAFWRAAGQR LLDCLDGLPA AQKAVFLLHH EDGLSLAELA AALELGFETA KSRLRYAMSK LRTCMGAYLP GAGVLTAPEG SA
|
| |