| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1707 |
|---|
| Symbol | |
|---|
| ID | 7271270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1769973 |
|---|
| End bp | 1773023 |
|---|
| Gene Length | 3051 bp |
|---|
| Protein Length | 1016 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643570322 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_002466738 |
|---|
| Protein GI | 219852306 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.569761 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCTA ACGAAAATAC AAAGGAACTT GAAATAACAA AGGAAAAGGC GCAGCAGTTT
GAGTTACTCT CCGCCGGACA GAAGAAAGCA GTCACTGATA TTCTTTTCAT CGCAGAGAAG
GCGAAGGGCG GAGATCTCTC TGCACGGATT GACCTTGCCA ACCACACCGG AGACTTCAAG
ATGATCGCCG AAGGGATCAA CACCCTCCTC GACGTCTTCA CCGAGAAGAA CTCCTGGTAT
AAGGCGATCA TCGATGCGGT GCCATTCCCG ATCCATGTCA CCGACCTGGA CATGAAATGG
ACGCTGATGA ATGCGGCCTT TGAGAAGACG CTGATCGAGC AGGGAGCAAT TAAGAACCGT
GACACCTCCA TGGGACTGCC CTGTTCCACA GCCAACGCGA CGATCTGCAA CACCGAGGGA
TGCGGGATCC GGCAGCTGCA CAAAGGGGTC ACCGAGAGTT ACTTCGTCTG GGGTGAGATG
AATGGCAAAC AGACCACCTC GTCCCTCCGC GACCAGAAAG GGAACCAAAT TGGATATGTT
GAAGTCGTAC AGGACCTCAC TTCAGTCATT GCGGTCCGTG ACTTCACCAA GGCCGAGGTG
GACCGAATGG CAACAAATCT CGCCCTGCTC GCAAAAGGAA ACCTTAACTT CGACCTGACC
GTCAAGCCGG CTAACAAATT CACCCAGGCA GAGCATGATG ACTTTGTGAA GATGAACGAG
AACCTGCAGG AGGCGCAGCT GGCGATCAGT GGCCTCATCA ACGATGCGGA GATGCTTGCC
AATGCAGCCG TCGAAGGCAA ACTCTCGATA AGAGCGGATG CAACAAAACA TCAAGGCGAT
TACGAGAAGA TTATCGAGGG ATTCAACCAG ACGCTCGATG CGGTCATCGG ACCATTAAAT
ATCGCTGCTG ACTTTGTCGC CAAGATCAGC GCAGGGATAG CACCAGAAAA GATCACAGCG
GATTATCAGG GTGACTTCAA TGTTCTGATG CATAACCTGA ATCAGCAGAT CGATGTGATT
GTGATGCGGA ATACTGAACT TGATATGCTG ATAGAGGCTG CAATCGAGGG TAAACTCGCA
ACACGCGCCG ATCCTTCCAA GTTCCAGGGT GGTAACAAAA AGATGATGGT GGGTCTCAAT
GCGATGCTCG ATGCCATCAT CGCTCCGTTA AATGTTGCCA TAGATTATTA TAATAAAATC
GGTATTGGCG ACATTCCAGA AAAGAGAACC AACAAGGTGA ACGGCGATAT CATCGCGATG
CAGAAAAGCA TCAACAACTG TATCGACAAC ATCAATGCAC TCGTTGCTGA TGCCAATATG
CTCTCGGTAG CAGCAGTCGA AGGAAAACTC GCGACTAGGG CGGACGCAAC CAAACATCAG
GGTGATTACC GGAAGATCAT CGAAGGGGTC AACCAGACCC TCGATGCTGT TATCACACCA
TTGAATCTGG CTGCAGAATG CATTGATCGG ATCAGTAAAG GTGATATTCC TGATAAGACA
AACCGCCAGC TCAATGGTGA CTTCAACACA CTTCATATCA ACCTGAACAA CCTCATCGAC
AACATCAATG CACTCGTCAC CGATGCTAAT CTGCTCGCAG AAGGCGCCAT AGAAGGAAAA
CTCGCCAACA GAGCGGATAC AACCAGACAC CAGGGTGATT ATCGGGAGGT TATCGAGGGA
TTCAACAGAA CGCTCGATGC CATCATCGCT CCGTTAAATG TTGCCATAAA TGGTTATGAT
AAGATCGGGA AAGGCGATAT CCCCGAGAAG AGAACCAACA AGGTGACTGG GGATATCATC
GGGATGCAGA AGAGCATGAA CGCCTGTATT GACAACATCA ATGCACTCGT CACCGATGCT
AATTTGCTCG CAGAAGCCGC CATCGAAGGA AAACTCGCCA ACAGAGCGGA CGCAACCAGA
CACCAGGGCG ACTACAGGAA GATCATCGAG GGATTCAATA AGACGCTCGA CGCCGTGATC
GAGCCGGTCG ATGAAGCGAT GCGGGTTGCA CATGAGTTCT CCGAGTATAA TTATCAGGCC
AGGATGGACA AGAACCTCAG AGTTGCCGGA GACTTTGTCA AATTCAGGGA TGCCCTGGAC
AATATCGGGA TCTCGGTCTC AGCCGCAATA GGAGACATCA ATAATCATGT CACCGACCTC
GCAGCCTCGG CAGAGGAGGC GAACGCAAGC ATTGAGGAGG TGGTTTCCGG GGCACAGCAG
GTCGCTGAAA GTGCCGGCAA GGTCAGTTCC AACGCTGAGA AAGGGAACCA GGGTCTCGAA
CAGGTACTCA AGGCGATGGA GGACCTCTCT GCCGCCGTTG AGGAGGTGAC CGCCAGCAGC
GAGTCTGTAG CTAACCTTGC AAACAGTGCA AACACCCTCT CCAAGGACGG GGCCGAACTC
GCACGGAAGG CCGAACAGGG GATGGTCGGG ATCACCCGAT CCACCACGGA GGTGGACCAG
ATCATCGGCG AGATCAAGTC AGAGATGCAG AAGATCGGAA AGATCGTCGG CCTGATCTCG
GACCTGGCCA ACCAGACCAA CCTGCTCGCC CTGAACGCGG CCATCGAGGC CGCCCGAGCC
GGCGATGCCG GCCGTGGGTT CGCCGTGGTC GCCGCGGAGG TGAAGTCCCT CGCCCAGGAG
TCGAGGACCT CTGCTGAGTC GATCGCCGAG ATGATCGGCG GTCTCCAGCA CAAGTCAGAA
CTGGCCGCAC AGGCGACCGC ATCCGCCTCA AAAGAGGTCG GTGAGGGGTC AGCGGTCCTC
TCTGAGACTC TGAACGTCTT CAACCGGATC GTTGCCGATG TCGAGAAGAT CACCCGCTCG
GTCGAAGAGG TTGCAAGCGC CTCCGAAGAG CAGGCAGCCA CCGTCGAGGA GATCACGGCC
AGTGTTCATG AGGTGAGTTC CCTGGTGGAC GGAACGGCCA GCGACGCAGG GGATGCCGCA
GCAGCCAGCG AGGAGTCCTC GGCGGCGATC GATGAAGTCG GAAAGATCAT CGAGAATGTA
AACGTGATTG TCGACTCAGT CTCCAGTGGG ATCAATAAAT TCAGGGTCTG A
|
|---|
| Protein sequence | MDPNENTKEL EITKEKAQQF ELLSAGQKKA VTDILFIAEK AKGGDLSARI DLANHTGDFK
MIAEGINTLL DVFTEKNSWY KAIIDAVPFP IHVTDLDMKW TLMNAAFEKT LIEQGAIKNR
DTSMGLPCST ANATICNTEG CGIRQLHKGV TESYFVWGEM NGKQTTSSLR DQKGNQIGYV
EVVQDLTSVI AVRDFTKAEV DRMATNLALL AKGNLNFDLT VKPANKFTQA EHDDFVKMNE
NLQEAQLAIS GLINDAEMLA NAAVEGKLSI RADATKHQGD YEKIIEGFNQ TLDAVIGPLN
IAADFVAKIS AGIAPEKITA DYQGDFNVLM HNLNQQIDVI VMRNTELDML IEAAIEGKLA
TRADPSKFQG GNKKMMVGLN AMLDAIIAPL NVAIDYYNKI GIGDIPEKRT NKVNGDIIAM
QKSINNCIDN INALVADANM LSVAAVEGKL ATRADATKHQ GDYRKIIEGV NQTLDAVITP
LNLAAECIDR ISKGDIPDKT NRQLNGDFNT LHINLNNLID NINALVTDAN LLAEGAIEGK
LANRADTTRH QGDYREVIEG FNRTLDAIIA PLNVAINGYD KIGKGDIPEK RTNKVTGDII
GMQKSMNACI DNINALVTDA NLLAEAAIEG KLANRADATR HQGDYRKIIE GFNKTLDAVI
EPVDEAMRVA HEFSEYNYQA RMDKNLRVAG DFVKFRDALD NIGISVSAAI GDINNHVTDL
AASAEEANAS IEEVVSGAQQ VAESAGKVSS NAEKGNQGLE QVLKAMEDLS AAVEEVTASS
ESVANLANSA NTLSKDGAEL ARKAEQGMVG ITRSTTEVDQ IIGEIKSEMQ KIGKIVGLIS
DLANQTNLLA LNAAIEAARA GDAGRGFAVV AAEVKSLAQE SRTSAESIAE MIGGLQHKSE
LAAQATASAS KEVGEGSAVL SETLNVFNRI VADVEKITRS VEEVASASEE QAATVEEITA
SVHEVSSLVD GTASDAGDAA AASEESSAAI DEVGKIIENV NVIVDSVSSG INKFRV
|
|---|
| |