| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1279 |
|---|
| Symbol | |
|---|
| ID | 7271139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1306531 |
|---|
| End bp | 1308165 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643569913 |
|---|
| Product | Choline dehydrogenase |
|---|
| Protein accession | YP_002466336 |
|---|
| Protein GI | 219851904 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAGC AGATTTACGA CTATATCATT GTAGGGGCCG GTACATCCGG ACCGATCGTA
GCATCCAGAC TGAGTGAAGA CCCCCATGTC TCCGTTCTAT TGCTGGAGGC AGGTGGGGAG
AATATCAACG ATATCTCCCG GGCACCGGGA GCCTTCTTTA AGGTTTGGGG GACCGATTAC
GACTGGCAGT ATGAGACTGA ACCGCAAAAG GGCTTAAACA ACCGGAAGAT CTACGCTCCC
CGGGGTCGTG TTGTCGGGGG ATCTTCGGCA ATCAACGTCG GATTCTGGAT GAGGGGGACC
AGGGAAGACT ACGATTTTTG GGAGCAGCAG GGCGCCAAGG GTTGGAATTA TGAAAAGGCA
CTGAAGATGT TCCAAAAAAT TGAGGATACT GATCTAGGAC CGACCAGGTA CCGGGGAAAG
GGCGGCATGG TACATCTGGA AGATTCAGCA TATCCGTCAG AATTTACTCA GACCCAGTTT
GACGCGTTTA AAGAAGCCGG GTTTGGCGAC ATCGGAGATT TTCAGGCTGA AGATCCGTAT
TGTGCGGATA TCGTCCAGAA AGATTACATC AACAGGGTCC GGCACACCCC TGCCGACAGT
TATTTGTCCG AAGAAGTCCG CAAAAGGCCC AACCTGACCG TTCAGACCGA CACCTTTGTC
CGAAAAGTTA TCTTTAAAGA AAACCGGGCG GTAGGCGTCG AAGTCGAATA TAAGGGCGAA
CTGCAGCAGG TCGAGGCGCG TGCCGAGGTC ATTCTTTCGG CGGGCAGTTT CAACACGGCA
CAGATCCTGA AATTATCAGG AGTCGGGCCC AAAAAGGAAC TGGCCAGGCA CGGCATACCG
GTGGTTGCAG ATGTTCCGGG TGTCGGCGAA AACCTCAACG ATCATCTGAT GGTCAACGTC
CGGGCCCTCT CTTCTGTACC CATTCCAGAT ACTCATTTCA ACCCTATCAG CGATGAGTCT
CTGGCGCAGT GGCGAAAAGA GCAGACCGGG CCTGCCTGTT ACTATCCCGG CCCGGCGGCC
GGTCTGGTAT CCAGCGATGG AACCCACACC GGTCCGGACT TTGAAATGAT TCTGCAGTAT
GTCCATACCG CGAATGGTTC TGAAAAAGAG TTCGCAGGAG TGGAAAATAT CGCCGAAAGA
AGCGGATACT CCTTCCCGGT GATTCTTATG ATACCGAAGA GCAGGGGAAC TGTCCTGCTG
GCTTCGGGGG ACCCGCATGA CAAGCCCCTC ATCGATCCGA ACTACTTCGA CGACCCGTCT
GATATGAAGA GGTTTATCAA AGGCATTCGT TATGCATTGC AGCTCACCCA AACCACAGCC
CTTTCACCCT ATACGGAGAT GGTGCATCCC GCCCTGGACG CAAGCGACGC TGATATCGAA
GCCTTCATTC GCAATGAAGC AAGCACCGTA TTCCATCCGG TGGGCACCGC TCGTATCGGC
GATCTCGAAA AAGACCCCAT GGCTGTGGTG GATTCCCATC TGCGGGTCCG TGGCGTGGAA
GGGCTGCGTG TTGCGGATGC GTCTATCATG CCGCAGGTGA ATCGCGGGCA TACCATGGCG
CCGGTGACCT ACATCGGTGA GATGGCCGCT CAGATCATCC AGTCAGAAAC AGATCGACCG
TACCAGCGTT CATAA
|
|---|
| Protein sequence | MMKQIYDYII VGAGTSGPIV ASRLSEDPHV SVLLLEAGGE NINDISRAPG AFFKVWGTDY
DWQYETEPQK GLNNRKIYAP RGRVVGGSSA INVGFWMRGT REDYDFWEQQ GAKGWNYEKA
LKMFQKIEDT DLGPTRYRGK GGMVHLEDSA YPSEFTQTQF DAFKEAGFGD IGDFQAEDPY
CADIVQKDYI NRVRHTPADS YLSEEVRKRP NLTVQTDTFV RKVIFKENRA VGVEVEYKGE
LQQVEARAEV ILSAGSFNTA QILKLSGVGP KKELARHGIP VVADVPGVGE NLNDHLMVNV
RALSSVPIPD THFNPISDES LAQWRKEQTG PACYYPGPAA GLVSSDGTHT GPDFEMILQY
VHTANGSEKE FAGVENIAER SGYSFPVILM IPKSRGTVLL ASGDPHDKPL IDPNYFDDPS
DMKRFIKGIR YALQLTQTTA LSPYTEMVHP ALDASDADIE AFIRNEASTV FHPVGTARIG
DLEKDPMAVV DSHLRVRGVE GLRVADASIM PQVNRGHTMA PVTYIGEMAA QIIQSETDRP
YQRS
|
|---|
| |