Gene Mpal_1279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpal_1279 
Symbol 
ID7271139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosphaerula palustris E1-9c 
KingdomArchaea 
Replicon accessionNC_011832 
Strand
Start bp1306531 
End bp1308165 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content54% 
IMG OID643569913 
ProductCholine dehydrogenase 
Protein accessionYP_002466336 
Protein GI219851904 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAGC AGATTTACGA CTATATCATT GTAGGGGCCG GTACATCCGG ACCGATCGTA 
GCATCCAGAC TGAGTGAAGA CCCCCATGTC TCCGTTCTAT TGCTGGAGGC AGGTGGGGAG
AATATCAACG ATATCTCCCG GGCACCGGGA GCCTTCTTTA AGGTTTGGGG GACCGATTAC
GACTGGCAGT ATGAGACTGA ACCGCAAAAG GGCTTAAACA ACCGGAAGAT CTACGCTCCC
CGGGGTCGTG TTGTCGGGGG ATCTTCGGCA ATCAACGTCG GATTCTGGAT GAGGGGGACC
AGGGAAGACT ACGATTTTTG GGAGCAGCAG GGCGCCAAGG GTTGGAATTA TGAAAAGGCA
CTGAAGATGT TCCAAAAAAT TGAGGATACT GATCTAGGAC CGACCAGGTA CCGGGGAAAG
GGCGGCATGG TACATCTGGA AGATTCAGCA TATCCGTCAG AATTTACTCA GACCCAGTTT
GACGCGTTTA AAGAAGCCGG GTTTGGCGAC ATCGGAGATT TTCAGGCTGA AGATCCGTAT
TGTGCGGATA TCGTCCAGAA AGATTACATC AACAGGGTCC GGCACACCCC TGCCGACAGT
TATTTGTCCG AAGAAGTCCG CAAAAGGCCC AACCTGACCG TTCAGACCGA CACCTTTGTC
CGAAAAGTTA TCTTTAAAGA AAACCGGGCG GTAGGCGTCG AAGTCGAATA TAAGGGCGAA
CTGCAGCAGG TCGAGGCGCG TGCCGAGGTC ATTCTTTCGG CGGGCAGTTT CAACACGGCA
CAGATCCTGA AATTATCAGG AGTCGGGCCC AAAAAGGAAC TGGCCAGGCA CGGCATACCG
GTGGTTGCAG ATGTTCCGGG TGTCGGCGAA AACCTCAACG ATCATCTGAT GGTCAACGTC
CGGGCCCTCT CTTCTGTACC CATTCCAGAT ACTCATTTCA ACCCTATCAG CGATGAGTCT
CTGGCGCAGT GGCGAAAAGA GCAGACCGGG CCTGCCTGTT ACTATCCCGG CCCGGCGGCC
GGTCTGGTAT CCAGCGATGG AACCCACACC GGTCCGGACT TTGAAATGAT TCTGCAGTAT
GTCCATACCG CGAATGGTTC TGAAAAAGAG TTCGCAGGAG TGGAAAATAT CGCCGAAAGA
AGCGGATACT CCTTCCCGGT GATTCTTATG ATACCGAAGA GCAGGGGAAC TGTCCTGCTG
GCTTCGGGGG ACCCGCATGA CAAGCCCCTC ATCGATCCGA ACTACTTCGA CGACCCGTCT
GATATGAAGA GGTTTATCAA AGGCATTCGT TATGCATTGC AGCTCACCCA AACCACAGCC
CTTTCACCCT ATACGGAGAT GGTGCATCCC GCCCTGGACG CAAGCGACGC TGATATCGAA
GCCTTCATTC GCAATGAAGC AAGCACCGTA TTCCATCCGG TGGGCACCGC TCGTATCGGC
GATCTCGAAA AAGACCCCAT GGCTGTGGTG GATTCCCATC TGCGGGTCCG TGGCGTGGAA
GGGCTGCGTG TTGCGGATGC GTCTATCATG CCGCAGGTGA ATCGCGGGCA TACCATGGCG
CCGGTGACCT ACATCGGTGA GATGGCCGCT CAGATCATCC AGTCAGAAAC AGATCGACCG
TACCAGCGTT CATAA
 
Protein sequence
MMKQIYDYII VGAGTSGPIV ASRLSEDPHV SVLLLEAGGE NINDISRAPG AFFKVWGTDY 
DWQYETEPQK GLNNRKIYAP RGRVVGGSSA INVGFWMRGT REDYDFWEQQ GAKGWNYEKA
LKMFQKIEDT DLGPTRYRGK GGMVHLEDSA YPSEFTQTQF DAFKEAGFGD IGDFQAEDPY
CADIVQKDYI NRVRHTPADS YLSEEVRKRP NLTVQTDTFV RKVIFKENRA VGVEVEYKGE
LQQVEARAEV ILSAGSFNTA QILKLSGVGP KKELARHGIP VVADVPGVGE NLNDHLMVNV
RALSSVPIPD THFNPISDES LAQWRKEQTG PACYYPGPAA GLVSSDGTHT GPDFEMILQY
VHTANGSEKE FAGVENIAER SGYSFPVILM IPKSRGTVLL ASGDPHDKPL IDPNYFDDPS
DMKRFIKGIR YALQLTQTTA LSPYTEMVHP ALDASDADIE AFIRNEASTV FHPVGTARIG
DLEKDPMAVV DSHLRVRGVE GLRVADASIM PQVNRGHTMA PVTYIGEMAA QIIQSETDRP
YQRS