| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0603 |
|---|
| Symbol | |
|---|
| ID | 7270190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 592855 |
|---|
| End bp | 593454 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643569251 |
|---|
| Product | DNA-directed RNA polymerase subunit E' |
|---|
| Protein accession | YP_002465697 |
|---|
| Protein GI | 219851265 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1095] DNA-directed RNA polymerase, subunit E' |
|---|
| TIGRFAM ID | [TIGR00448] DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATTACA AACTGTTGCT CGAAGACAAG GTGCGGGTCC CCCCCCACCG ACTGGGTGAG
GATCTGATCA AGGTGATCCT CGATGTGCTG CAGGAGCAGC TTGAGGGATC CATCGACAAG
GAGATCGGGA TCTTCATTGC AGTCACGAAG GTGATCGAGG TCGGCGAGGG CGAGATGGTT
CCGGGCGACG GGGCCGTCTA TTATGATGTG AAGTTCGAGG CGCTCGGACT CCGCCTCTCT
CTGCAGGAGG TGCTCGAAGG AGTGGTCGTC GAGACCACGA CCTTTGGTGC CTTCGTCAGT
CTCGGACCGA TCGATGCCAT GCTCCATGTG AGCCAGATTT CAGACGAGTT CATCAACTAT
GATGAGAAGA ACGCCCGCCT GATTTGCAAG GATTCAGGAA GATTCATCGG CGTCGGCGAT
CGGATCAGAG CGCGTGTCGT GACACTGAGT CTGAACGAAC GTGAACCCCG AGATAGCAAG
ATCGGACTCA CGATGCGGCA GGCTGGGCTG GGAACTGAAC TCTGGCTTGA AGAGGAACTG
AAACGCGAGA AGGAAGAGAA CAAGGAAAAA GGGGGAGTAG AGCATGGCAG TGAGCACTAA
|
|---|
| Protein sequence | MYYKLLLEDK VRVPPHRLGE DLIKVILDVL QEQLEGSIDK EIGIFIAVTK VIEVGEGEMV
PGDGAVYYDV KFEALGLRLS LQEVLEGVVV ETTTFGAFVS LGPIDAMLHV SQISDEFINY
DEKNARLICK DSGRFIGVGD RIRARVVTLS LNEREPRDSK IGLTMRQAGL GTELWLEEEL
KREKEENKEK GGVEHGSEH
|
|---|
| |