| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mnod_3048 |
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| Symbol | |
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| ID | 7303975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium nodulans ORS 2060 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011894 |
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| Strand | + |
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| Start bp | 3142807 |
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| End bp | 3146421 |
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| Gene Length | 3615 bp |
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| Protein Length | 1204 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 643600747 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_002498292 |
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| Protein GI | 220922990 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCACAC TGCCCCGCTC CCGCCCTCTC TGGCTCGGTC TTCTCGCCAC GCTCGCAGGC
TCCGCCGCCC TCGCGGCGCT CGTCTGGTGG GCCGGTCCTC TCGTGGCCTT CGGCACAGCG
CGTCCGCTCG AAGGCGACCT CCCGCGCGCC GCGCTCGCCG CCGCGATCCT GCTCGCGGGG
CTCGCCACCT GCGGGCTTCG CCTGCGGCGC CACAGGCGGA GCGTAGCGGC GCTCGAAGCC
GAGATCAGCC GGGACGAGGG CGACGGCGCG GTCCTCGGCG CGACCATGCG CGACGCGCTC
GCGACGCTGC GCAAGGTCGG CTCGCCCAAG GGCGACCCGC TCTACGAACT GCCCTGGTAC
GTCATCATCG GCCCGCCGGG CGCCGGCAAG ACGACGGCGC TGGTCAATTC CGGGCTCAAG
TTCCCGCTCG CGCGCGAGGG CGCCGCCGCC GCGGTGGCCG GCGCGGGCGG CACGCGCTAC
TGCGACTGGT GGTTCGCCGA GGAGGCCGTG CTGATCGACA CGGCCGGCCG CTACACCACG
CAGGATTCCG ATCCCCGCGG CGACCGCGAG AGCTGGCTCG CCTTCCTCGA CCTCCTCAAG
CGCCACCGGC CGCGCCAGCC CATCAACGGC GTCCTCGTCG CCATCAGCCT GGAGGACCTG
ATCGCCGGGC CGCCCGAGGC GGTCGCCGCC CACGCCTCCG CCGTCCGCAA GCGGCTCCTC
GAACTGCACG AGCGGCTCGG CGTCGACTTC CCGGTCTACG CCCTGTTCAC CAAGGCCGAC
CTCATCGCGG GCTTCGCCGA ATTCTTCGGC CATCTGCCGG AGGCCGGGCG GCGCATGGTC
TGGGGCCATA CCTTCCAGAC CGGTGAGCGC ACCCGCAACA TGGTCGGGTC GGTCGCCGCC
GAGTTCGACG CCCTCGTCGA GCGGACGAAC GCGTGGCTGC CCGACCGGCT GCAGGAGGAG
CCGAACCCGA CCTCGCGGGT CGTGCTCTTC GGCTTCCCGT CCCAGGTCGC CTCGCTCAAG
GACCTCGTCG TCGACTTCCT CACCGCCGTC TTCGAGCCGA CGCGCTACCA CGCGGCGGCG
GCCCTGCGCG GCTTCTACTT CGTGTCGGGC ACGCAGCAGG GCACGCCGAT CGACCGGCTC
ATCGGCGCCC TGTCGCGCAG CTTCGGCTCG CAGGACGCGG CGCCCGATGC CGCCCCGGGG
CTCGGGCGCA GCTTCTTCCT CGCCGACCTC CTGCGGAAGG TCGTCATCGC CGAGGCCGGC
TGGGTCTCGA CGAACCGGGC CGCGTTGCGC CGCCTGCTGG CCCTGCGCGC GGGTGCCTAT
GCGGGCCTCG CGCTCGCGGC GGCGCTCGCG GTAGGCTTGT GGTGGACGAG CTTCCTGCGC
AACGAGGCGC TCTCGGGCCA AGCCGCCGCA GGGGCCGCGA AGTACCGCGC CGAGGCGGTC
GACGTCCTGC GCGACTCCGT CGTCGCCGAC CGCAACTTCT CGAAGGTCCT GCCCTATCTC
AACACCCTGC GCTACCTGCC GGCCGGCTAC GCGAGCCGCG GCGAGGCCGG GCCGGTCCTG
GCGACCTTCG GGCTCTCCCA GCGCGCGCGG CTCGGCTCGG CGGCGGAGAC CGCCTACCAT
GCCGGCCTCG AACGCCTGCT GCGCCCGCGC CTGATCTACC GGCTCGAAGA GCTGATCGAG
GCCAATCGCG GCAATCCGGG CGTCCTCTAC GAAGCCCTGA AGGTCTACCT GATGATCGGG
CGCCGGCCCG AGGCACCCCT CGACCGCGAC CTCGTCCTCG CCTGGATGCG CCGCGACTGG
GCGGAGTTCC TCTACTCCGG CGCGGGCTTC GCCAAGGGCC GCCAGCTGCT GGAGGACCAC
CTCGTGGCGA TGCTCGACCT GGAGGATGCG GGCGAGCCCG TCGTGTCGAT CAACCAGGGG
CTCGTCGAGG AGACGCAGCG CACCCTCGCG CGGCTGAGCG TCGCCGAGCG CGCCTACGAA
CTCCTCAAGT CGGAGGCGCG CGCCTCGGGC CGCCGCGACT GGACGCTCGC CGCCGCCGCA
GGACCCGACG CCGCCCTCGT CTTCGAGGCG ACCGGGCGGG GCGACCTCGA CGGCGTGCGC
GTGCCCTATT TCCTGACCTA CGACGGCTTC TTCGACGCCT TCATCGACCG ATTCGGCGAC
ATCGCCGAGG CGGTGGGGCG CGACCGCTGG GTGCTCGGCG GCGCGGGCGA GGAGGAGGCC
TACACGGCGC AGTACGGCTC GCTCTTCGCC GACCTCCTCA AGCTCTACGC CCGCGACTTC
GCGGCGGCGT GGCGCAGCAC TCTCGGGCGC CTGAAGCTGC GCCCGCTTGC CGCCGACCGG
CCGCGCTACG TGGCGCTCAC CGCGCTCGCG GCTCCGACCT CTCCGCTCAA GCGCCTCCTC
GAATCCGTCG GAGCCGAGAC GCGCCTGACC CGCGAGCGGC CCGCGGCCCG GCCCGGGACG
GAGGCCGATC CCCGCGCCAC GAAGGCCGCT GCCGTCGTGG CCGGCGCGCT GTCGGCGGAA
GCCGAGCGGC AGGCCGCGGG CGTGCTGCCG TCCCGCGTGG CCTCGACCGC CTCAGCGCTC
GGGCGCCTCG CGCTCGAACG CACGCCGCCC CAGGCCGCAG GCCCGGCGCG GATCGACGCG
AGCGAGGCGC CGGGCGCCGC GATCGAGGCG GGCTTCCGGG CCTTCCACGC CGTGCTCGAC
GGCGAGGGCG GGAAGCGGGC GGTCGACGCC CTGCTGGCGA ACTTGAGCGA CCTGCGCGCC
GCCGCGCTGG AGGCCGCCGC GCCGGGCGGG GCGACCGCGC CGCTCTCCGC CCAGGCGCGC
AACCTGCGCT CGCTCGCGTC CCGCTTCCCG GCCCCGTTCG AGGCCATGAT CCAGGGGGCC
GCAGCCGAGT TCGAGGGCAG CGTCACGGGG GCGGCGGTGG CGGGCCTCGC CCAGGGGCTG
GCCGAGACCG TCACGCGGGA GTGCCAGGCG GCCGTCGCGG GCCGCTACCC CTTCGCGCGC
TCCGAGCGGG AGATCCCGCT CGCCGACTTC GCCCGGCTCT TCGCCCCCGG CGGCATCCTC
GACCGCTTCT TCACGCAGAA CCTCGTCTCC CACGTGGACC GCTCGCGGCC GCAATGGACG
TGGCGCGCCG ACGACCAGGT CGCCCGCGCC TTCTCGCTCG CGACCCTTCG CGAGTTCCAG
CGCGCGGCCG AGATCCGCGA CGCCTTCTTC GCGGCCGGCG GGACCACGCC CGGCTTCACC
CTCGCGGTCA CGCCGCTCGC GCTGACCGGG GACGCGACGC GCGCGAAGTT CGAGCTGAAC
GGCAGCACCG TCGAGGCGGG CACCGGCGTG AACGCGCCCG CCTCGCTCGC CTGGCCCGGC
GCCTCCGGCC TCGGCCGCGC GGCGGTGAGC GTCGAGGGGA TCTTCGGGAC GAACGCGGCC
AGCGTCGAGC GCGCGGGGGC CTGGGCCCTC TACCGCCTCC TGGAGGCCGG CTCGTTGCTC
CGGCAGGGCG ACGCGGTCGT GGCGACCTTC TCGCTCGGAG GACGCGACGT ATCCTACCGC
CTTGCCGTGA GCGCCATTGC CAATCCGCTC ACGCTTCCGG CGCTGCGGGA GTTCCGCTGC
CCGAGCAGCC TGTGA
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| Protein sequence | MITLPRSRPL WLGLLATLAG SAALAALVWW AGPLVAFGTA RPLEGDLPRA ALAAAILLAG
LATCGLRLRR HRRSVAALEA EISRDEGDGA VLGATMRDAL ATLRKVGSPK GDPLYELPWY
VIIGPPGAGK TTALVNSGLK FPLAREGAAA AVAGAGGTRY CDWWFAEEAV LIDTAGRYTT
QDSDPRGDRE SWLAFLDLLK RHRPRQPING VLVAISLEDL IAGPPEAVAA HASAVRKRLL
ELHERLGVDF PVYALFTKAD LIAGFAEFFG HLPEAGRRMV WGHTFQTGER TRNMVGSVAA
EFDALVERTN AWLPDRLQEE PNPTSRVVLF GFPSQVASLK DLVVDFLTAV FEPTRYHAAA
ALRGFYFVSG TQQGTPIDRL IGALSRSFGS QDAAPDAAPG LGRSFFLADL LRKVVIAEAG
WVSTNRAALR RLLALRAGAY AGLALAAALA VGLWWTSFLR NEALSGQAAA GAAKYRAEAV
DVLRDSVVAD RNFSKVLPYL NTLRYLPAGY ASRGEAGPVL ATFGLSQRAR LGSAAETAYH
AGLERLLRPR LIYRLEELIE ANRGNPGVLY EALKVYLMIG RRPEAPLDRD LVLAWMRRDW
AEFLYSGAGF AKGRQLLEDH LVAMLDLEDA GEPVVSINQG LVEETQRTLA RLSVAERAYE
LLKSEARASG RRDWTLAAAA GPDAALVFEA TGRGDLDGVR VPYFLTYDGF FDAFIDRFGD
IAEAVGRDRW VLGGAGEEEA YTAQYGSLFA DLLKLYARDF AAAWRSTLGR LKLRPLAADR
PRYVALTALA APTSPLKRLL ESVGAETRLT RERPAARPGT EADPRATKAA AVVAGALSAE
AERQAAGVLP SRVASTASAL GRLALERTPP QAAGPARIDA SEAPGAAIEA GFRAFHAVLD
GEGGKRAVDA LLANLSDLRA AALEAAAPGG ATAPLSAQAR NLRSLASRFP APFEAMIQGA
AAEFEGSVTG AAVAGLAQGL AETVTRECQA AVAGRYPFAR SEREIPLADF ARLFAPGGIL
DRFFTQNLVS HVDRSRPQWT WRADDQVARA FSLATLREFQ RAAEIRDAFF AAGGTTPGFT
LAVTPLALTG DATRAKFELN GSTVEAGTGV NAPASLAWPG ASGLGRAAVS VEGIFGTNAA
SVERAGAWAL YRLLEAGSLL RQGDAVVATF SLGGRDVSYR LAVSAIANPL TLPALREFRC
PSSL
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