| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_2771 |
|---|
| Symbol | |
|---|
| ID | 4111603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | + |
|---|
| Start bp | 2917155 |
|---|
| End bp | 2918456 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638031895 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_639934 |
|---|
| Protein GI | 108799737 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.473519 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAC CCGCGTGGGT GGAACACGTC ATCTGGTGGC AGATCTACCC GCTGGGGTTC
GTCGGCGCCT TCCCCGCCGA TCCCCCACCC ACACCCGACG AGCACCGGTT GCGGCGCATC
GTGGACTGGC TCGACCACGC CATCGCGCTC GGCGCGTCCG GTCTGGCGCT GGGGCCCGTA
TTCGCCTCGC GCACACACGG ATACGACACC ACCGACCACT ATTCGATAGA TCCGCGACTC
GGTGACGACG GCGACTTCGA CGAACTGGTC GACCAGGCGC ACCGACGCGG TCTTCGGGTT
CTGCTCGACG GCGTGTTCAA CCACGTCGGC ACCGACTTCC CCCGCTACCG CGAAGCACTC
GACGGCGGAC CCGAGCATCC CTCGTCGGCC TGGTTTCGGC GCCGGCGCAA CGGCTTCGAC
ACGTTCGAGG GCCACGGCGA GCTGATCGCG CTCAACCACC GCGAGCCCGC CGTCGTCGAC
TACACCGTCG AGGTGATGTC GCACTGGCTC GCCCGTGGGG CCGACGGCTG GCGGCTCGAC
GCCGCATACG CCGTCCCGGA CGGGTTCTGG TCCCAGGTGC TGCCGCGGGT GCGCGAGGCG
CATCCCGACG CGTGGTTCGT CGGCGAGGTG ATCCACGGTG ACTACGCGGG CCGGGTGGCG
GCCGGTTTCG ACTCCGTCAC CCAGTACGAG CTGTGGAAGG CGGTGTGGAG CAGCCTCAAC
GACGGCAACT TCCACGAACT CGACCACGCC TTGGCGCGGC ACGACGAGTT CCTCGCCACG
TTCGTGCCGC TGACGTTCGT CGGCAACCAC GACGTCACCC GCATCGCGAG CCGGATGGAC
GATCCCCGCC ACCTCGAACA GGCGCTGGTG CTGCTGTTCA CGATCGGCGG GGTGCCAAGC
GTCTACGCCG GCGACGAGCT CGGATACCGC GGCGTCAAGG AGGACCGGGC CGGCGGTGAC
GACGCGGTGC GACCCGAATT CGGATCGCCG CCAACCGAAG ACAGCGATAT CTTCCGGCTG
CACAAGTACC TGATCGGACT GCGCCGCCGT CATCCGTGGC TGCACTGGGC GACGACCTCG
GCGGTGCAGC TGACGAACCG GCAGTACGTC TACGAGACCC GCCACGGTGA CGATGCGCTC
GTGGTGGCAC TCAACGTCGA CGACGCACCG CTGACGATCT CGGTCGGCGA CACCGCGCTG
CGCCGTGGCC GGGTGGTGGC CGGATCCGGG GCGCCACCCG CGGAGGAACT CGACCGGCTG
ACCGTGCCGC CGCACGGATG GGTGGTCGTC GCACCCGCTT GA
|
|---|
| Protein sequence | MTEPAWVEHV IWWQIYPLGF VGAFPADPPP TPDEHRLRRI VDWLDHAIAL GASGLALGPV
FASRTHGYDT TDHYSIDPRL GDDGDFDELV DQAHRRGLRV LLDGVFNHVG TDFPRYREAL
DGGPEHPSSA WFRRRRNGFD TFEGHGELIA LNHREPAVVD YTVEVMSHWL ARGADGWRLD
AAYAVPDGFW SQVLPRVREA HPDAWFVGEV IHGDYAGRVA AGFDSVTQYE LWKAVWSSLN
DGNFHELDHA LARHDEFLAT FVPLTFVGNH DVTRIASRMD DPRHLEQALV LLFTIGGVPS
VYAGDELGYR GVKEDRAGGD DAVRPEFGSP PTEDSDIFRL HKYLIGLRRR HPWLHWATTS
AVQLTNRQYV YETRHGDDAL VVALNVDDAP LTISVGDTAL RRGRVVAGSG APPAEELDRL
TVPPHGWVVV APA
|
|---|
| |