Gene Mmcs_2276 details

Gene Information

• Locus tag: Mmcs_2276
• Symbol: secD
• ID: 4111109
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Mycobacterium sp. MCS
• Kingdom: Bacteria
• Replicon accession: NC_008146
• Strand: +
• Start bp: 2413533
• End bp: 2415329
• Gene Length: 1797 bp
• Protein Length: 598 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 638031401
• Product: preprotein translocase subunit SecD
• Protein accession: YP_639440
• Protein GI: 108799243
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCATCGT CTTCGGCGCC GGTACATCCT GCCCGCTATC TGTCGCTCTT CCTTGTGCTT 
CTGGTCGGCG CCTTCCTCCT GGTCTTCCTG ACCGGTGACA AGAAGGCGGA CCCGAAGCTC 
GGAATCGACC TGCAGGGCGG TACCCGCGTC ACCCTGACCG CGCGAACCCC GGACGGCTCC 
CCGCCGAGCC GGGAATCGCT GGCCCAGGCC CAGCAGATCA TCAGCGCGCG TGTCGACGGG 
CTGGGGGTGT CGGGTTCTGA GGTCGTCGTC GACGGCGACA ACCTGGTCAT CACCGTTCCC 
GGCAACGACG GCAACGAGGC CCGTAACCTC GGCCAGACGG CGCGCCTCTA CATCCGGCCG 
GTCGTGCACG CCATGCAGGC GCAGCCGGCC GCTGCGCGGG ACGGTCAACA ACCCGCCCAG 
CCCGCCCAGC CCGGCCAACC CCAGCAGGCA CCCGGTCTGC CCGGCTTACC CGGACTGGTA 
CCGCAGCAGC CCGGCCAGCC TGAGCAGGCG CCACCGCCCG CGGCGCCCCC CGCCGAGACG 
CCACCGGCTC CGCAGCCCCG GCCCTACCCG CAGCAGCCGG CCCCGTCGCC GACCGAACCC 
TCACCGGCAC CGGCACCGCC GGCCCCTGCC GGCCCGGCCA CACCCGCGCC GTCGCCCACC 
CCGGGCCCGC CCAACAAGCG CGCGGACCTC GCGCAGCGCA TCGCCGACGA GAAGCAGCTG 
CGCCAGAGCA CCGATCCGTC CATCCAGTTG CTGGCTCTGC AGTTCCAGGC CACCCGCTGC 
GGTGAGGACG ACGTGCTCGC CGGCAACGAC GACCCCAACC TGCCGCTGAT CACCTGCTCG 
ACCGATGGGC AGACGGTGTA TCTGCTGAAC AAGTCGATCA TCAGCGGTGA GCAGATCGCC 
AACGCGTCCT CGGGCCTGGA CAACCAGCGC GGCGAGTACA TCGTCGACCT CGAGTTCAAG 
AGCGACGCCG CGAAGATCTG GGCGGATTTC ACCGCCGCCA ACGTCGGCAC GCAGACCGCG 
TTCACACTGG ACTCCCAGGT GGTCAGCGCC CCCGAGATCC AGGAAGCCAT CCCGGGTGGG 
CGCACCCAGA TCAACGGCCG CTTCACCGCG GACTCGGCGC GTGAACTCGC CAACGTCCTC 
AAGTACGGTT CGCTGCCGTT GTCGTTCGAA TCGTCCGAAG CCGAGACGGT GTCGGCGACA 
CTCGGGCTGG CCTCGCTGAA GGCGGGGCTG ATCGCCGGTG CGGTCGGCCT GGCGGCGGTG 
CTGCTGTACT CGCTGCTGTA CTACCGCTTG CTCGGCGTGC TGATCGCGCT GTCGCTGGTC 
GCCTCCGGCG CGATGGTGTT CGCGATATTG GTGCTGCTCG GCCGGTACAT CAACTACACC 
CTCGACCTGG CCGGTATCGC CGGTCTGATC ATCGGTATCG GTACCACCGC GGACTCCTTC 
GTCGTGTTCT TCGAACGCAT CAAGGACGAG ATCCGCGAAG GGCGGTCGTT CCGGTCGGCG 
GTCCCGCGCG GTTGGGCCAG AGCGCGGAAG ACGATCGTGT CCGGCAACGC GGTGACGTTC 
CTCGCCGCGG CGGTGCTCTA CTTCCTGGCC GTCGGCCAGG TCAAGGGCTT CGCGTTCACG 
CTCGGGCTGA CCACGATCCT CGACGTCGTC GTGGTGTTCC TGGTGACCTG GCCGCTGGTC 
TACCTGGCCT CGAAGACGAC GTGGGCGGCC AAACCGAAGT TCAACGGCCT CGGCGCGGTC 
CAGCAGATCG CGCGCGAACG ACGGGCGGCC GCACACGCGA CCGCGGGACG GGGATAG 

 

Protein sequence

MASSSAPVHP ARYLSLFLVL LVGAFLLVFL TGDKKADPKL GIDLQGGTRV TLTARTPDGS 
PPSRESLAQA QQIISARVDG LGVSGSEVVV DGDNLVITVP GNDGNEARNL GQTARLYIRP 
VVHAMQAQPA AARDGQQPAQ PAQPGQPQQA PGLPGLPGLV PQQPGQPEQA PPPAAPPAET 
PPAPQPRPYP QQPAPSPTEP SPAPAPPAPA GPATPAPSPT PGPPNKRADL AQRIADEKQL 
RQSTDPSIQL LALQFQATRC GEDDVLAGND DPNLPLITCS TDGQTVYLLN KSIISGEQIA 
NASSGLDNQR GEYIVDLEFK SDAAKIWADF TAANVGTQTA FTLDSQVVSA PEIQEAIPGG 
RTQINGRFTA DSARELANVL KYGSLPLSFE SSEAETVSAT LGLASLKAGL IAGAVGLAAV 
LLYSLLYYRL LGVLIALSLV ASGAMVFAIL VLLGRYINYT LDLAGIAGLI IGIGTTADSF 
VVFFERIKDE IREGRSFRSA VPRGWARARK TIVSGNAVTF LAAAVLYFLA VGQVKGFAFT 
LGLTTILDVV VVFLVTWPLV YLASKTTWAA KPKFNGLGAV QQIARERRAA AHATAGRG