| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_1882 |
|---|
| Symbol | |
|---|
| ID | 4110716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | - |
|---|
| Start bp | 2028169 |
|---|
| End bp | 2029731 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638031002 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_639047 |
|---|
| Protein GI | 108798850 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.710411 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGA CCGAACCCGC GCCGCCGGAG TCGGCCACCG GCCGTCCCTC GCCCCGCTGG
CGGGCGCTGC TGCTGGCCGC CGTCGCCGCC TGCGCCGCCT GCGGTCTGGT GTACGAACTG
GCCCTGCTGA CCCTGTCGTC GACCATCCAC GGCGGCGGCA TCGTCGCGAC GTCGCTGATC
GTCGCAGGCT ACGTGGCGGC ACTCGGGGCG GGTGCGCTCG CGGTCAAACC CCTGCTGGGG
CACGCCGCGA TCACGTTCGT CGCCGTGGAG ACGCTGCTCG GGGTCATCGG CGGCCTCTCC
GCCGCCGCGC TGTACGTCAC GTTCGCGTTC ATCGGCGGTT CGACCTGGGT GCTGGTGGTC
GGCACGGCGC TGATCGGCGG CCTCGTCGGC GCCGAGGTGC CGCTGCTGAT GACGCTGCTG
CAGCGCGGTC GCACCGCCGG GGCCGCCGAC AGCGGGCGGG TGCTGGCCAA CCTCAACGCC
GCCGACTATT TCGGTGCACT CGTCGGCGGG CTGCTCTGGC CGTTCCTGCT CCTGCCGCAC
CTCGGGATGA TCCGCGGCGC CGCCGCCACC GGGGTGATCA ACCTGGTCGC GGCCGCGGTG
GTCGCGGTGT TTCTGCTGCG CCACATCGTC TCGGGCCGGC AACTTGCCGT CGCGCTGGGT
GCGTTGAGCG CCGCGCTGGT GCTGTTGGTG ACGCTGCTGA TCCGCGCCGA CGGGATCGAG
ACCACCACGC GCCAACGGCT TTACAACGAC CCGATCGTGG CGTTCGCCCG CTCGCCGTAC
CAGGAGATCG TCGTCACCAG ACGGGGTGAC GATCTGCGCC TCTACCTCGA CGGCGGGCTG
CAGTTCTCGA CCCGAGACGA GTTCCGGTAC ACCGAGAGCC TGGTGCACCC CGCACTCGGG
CAGGGTGCGC GATCGGTCCT CGTTCTCGGC GGCGGCGACG GGCTGGCCGC TCGGGAGTTG
TTACGCCAGA ACCAGATTCG CGACATCACC CAGGTGGAGC TGGACCCGGC GGTGATCGAC
CTGGCCCGCA CGACGCTGCG GGAGGCCAAC CGCGGCGCCC TCGACGACCC GCGCGTCACC
GTCGTGGTCG ACGATGCGAT GACGTGGCTG CGCGGCGTCG ACCGGACCTT CGACGCGGTG
ATCGTCGACC TGCCCGACCC CGACACCCCG GTGCTGGGCC GCCTGTACTC CACGGAGTTC
TACGCGCTGG TCACCCGCGC GCTGGCGCCG GACGGGCTGA TGGTGGTGCA GGCCGGCAGC
CCCTACTCGA CGCCGACGGC GTTCTGGCGC ACGGTGTCGA CGATCGAGTC CGCGGGTTTC
GCGGTCACCC CGTATCACGT CCACGTGCCG ACCTTCGGTG ACTGGGGTTT CGCGCTGGCC
CGTCGCGGTC CGACACCGCC GGCACCCACG GTCCCCGAAG GCGTTGGGCC GCTGCGGTTC
CTCAATCAGG AGGTGCTCGA CGCCGCGACG GTGTTCTCCG CGGACGTGGC CCGGCAGCGT
TTGGAACCGT CGACGCTGGA GCACCCCCGC ATCGTCGACG ACATCCGCAA GGGCTACCGC
TAG
|
|---|
| Protein sequence | MTTTEPAPPE SATGRPSPRW RALLLAAVAA CAACGLVYEL ALLTLSSTIH GGGIVATSLI
VAGYVAALGA GALAVKPLLG HAAITFVAVE TLLGVIGGLS AAALYVTFAF IGGSTWVLVV
GTALIGGLVG AEVPLLMTLL QRGRTAGAAD SGRVLANLNA ADYFGALVGG LLWPFLLLPH
LGMIRGAAAT GVINLVAAAV VAVFLLRHIV SGRQLAVALG ALSAALVLLV TLLIRADGIE
TTTRQRLYND PIVAFARSPY QEIVVTRRGD DLRLYLDGGL QFSTRDEFRY TESLVHPALG
QGARSVLVLG GGDGLAAREL LRQNQIRDIT QVELDPAVID LARTTLREAN RGALDDPRVT
VVVDDAMTWL RGVDRTFDAV IVDLPDPDTP VLGRLYSTEF YALVTRALAP DGLMVVQAGS
PYSTPTAFWR TVSTIESAGF AVTPYHVHVP TFGDWGFALA RRGPTPPAPT VPEGVGPLRF
LNQEVLDAAT VFSADVARQR LEPSTLEHPR IVDDIRKGYR
|
|---|
| |