Gene Mmcs_0969 details

Gene Information

• Locus tag: Mmcs_0969
• Symbol: rpoB
• ID: 4109809
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Mycobacterium sp. MCS
• Kingdom: Bacteria
• Replicon accession: NC_008146
• Strand: +
• Start bp: 1071942
• End bp: 1075442
• Gene Length: 3501 bp
• Protein Length: 1166 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 638030093
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_638140
• Protein GI: 108797943
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGCAGTCT CTAGCCAGAG CAAGTCAGCA AAAGCTATCA CCAATAACTC CGTTCCCGGA 
GCACCAAATC GCATTTCCTT CGCCAAGCTC CGTGAGCCTC TCGAGGTTCC GGGGCTTCTC 
GACGTGCAGA CGGAATCGTT CGACTGGCTG ATCGGCGCCG ACAGCTGGCG TCAGCGGGCC 
ACCGCACGCG GTGACGTGAA CCCGACCGGT GGCCTCGAAG AGGTGCTGAC CGAGCTCTCG 
CCCATCGAGG ACTTCTCCGG CTCGATGTCG CTGTCCTTCT CCGACCCGCG CTTCGACGAG 
GTCAAGGCAC CCGTCGACGA GTGCAAAGAC AAGGACATGA CGTACGCGGC CCCGCTGTTC 
GTCACGGCGG AGTTCATCAA CAACAACACC GGTGAGATCA AGAGCCAGAC GGTCTTCATG 
GGTGACTTCC CGATGATGAC CGAGAAGGGC ACCTTCATCA TCAACGGCAC CGAGCGTGTC 
GTGGTGAGCC AGCTGGTCCG CTCGCCGGGT GTGTACTTCG ACGAGTCGAT CGACAAGTCC 
ACCGAGAAGA CGCTGCACAG CGTCAAGGTG ATCCCCGGCC GCGGTGCGTG GCTCGAGTTC 
GACGTCGACA AGCGCGACAC CGTCGGCGTC CGCATCGACC GCAAGCGCCG TCAGCCCGTC 
ACCGTGCTGC TCAAGGCCCT CGGCTGGACC AACGAGCAGA TCACCGAGCG GTTCGGCTTC 
AGCGAGATCA TGATGAGCAC GCTGGAGAAG GACAACACCG CAGGCACCGA CGAGGCGCTG 
CTCGACATCT ACCGGAAGCT GCGTCCGGGC GAGCCGCCGA CCAAGGAGTC CGCGCAGACC 
CTGCTGGAGA ACCTGTTCTT CAAGGAGAAG CGCTACGACC TGGCCCGCGT CGGCCGCTAC 
AAGGTCAACA AGAAGCTCGG CCTCAACACC GACAAGCCGA TCACCAGCTC GACGCTGACC 
GAAGAGGACG TCGTCGCCAC GATCGAGTAC CTGGTGCGCC TGCACCAGGG CGACACCGTG 
ATGACGGTGC CCGGTGGCGT CGAGGTGCCC GTAGAGGTCG ACGACATCGA CCACTTCGGC 
AACCGTCGTC TGCGCACCGT GGGCGAGCTG ATCCAGAACC AGATCCGCGT CGGCCTCTCG 
CGTATGGAAC GTGTCGTGCG TGAGCGCATG ACCACCCAGG ACGTCGAGGC GATCACGCCG 
CAGACCCTGA TCAACATCCG TCCCGTCGTG GCGGCGATCA AGGAGTTCTT CGGTACGTCG 
CAGCTGTCGC AGTTCATGGA CCAGAACAAC CCGCTGTCCG GCCTGACCCA CAAGCGTCGC 
CTGTCGGCGC TGGGCCCCGG CGGTCTGTCC CGTGAGCGTG CCGGCCTCGA GGTCCGCGAC 
GTGCACTCCA GCCACTACGG CCGCATGTGC CCGATCGAGA CCCCTGAGGG TCCGAACATC 
GGTCTGATCG GTTCGCTGTC GGTGTATGCC CGGGTCAACC CGTTCGGCTT CATCGAGACG 
CCGTACCGCA AGGTCGAAAA CGGTGTGGTC ACCGACCAGA TCGACTACCT CACCGCCGAC 
GAGGAGGACC GCCACGTCGT GGCGCAGGCC AACTCGCCGC TCGACGACGA GGGCCACTTC 
ACCGAGGACC GCGTCCTGGT CCGCCGGAAG GGTGGCGAGG TCGAGTTCGT GTCGGCCACC 
GAGGTGGACT ACATGGACGT CTCGCCGCGC CAGATGGTGT CGGTCGCGAC GGCGATGATC 
CCGTTCCTCG AGCACGACGA CGCCAACCGT GCCCTCATGG GTGCCAACAT GCAGCGCCAG 
GCCGTTCCGC TGGTCCGCAG CGAGGCCCCG CTGGTCGGCA CCGGTATGGA GCTGCGCGCC 
GCGATCGACG CCGGCGACGT CGTCGTCAGC GAGAAGGCGG GCGTGGTCGA AGAGGTCAGC 
GCCGACTACA TCACCGTGAT GGCCGACGAC GGCACCCGGC ACACCTACCG GATGCGCAAG 
TTCGCCCGCT CCAACCACGG CACCTGCGCC AACCAGCGTC CGATCGTGGA CGCCGGCCAG 
CGTGTCGAGG CGGGGCAGGT CGTCGCCGAC GGCCCCTGCA CCCAGAACGG TGAGATGGCC 
CTGGGCAAGA ACCTGCTCGT GGCGATCATG CCGTGGGAGG GCCACAACTA CGAGGACGCG 
ATCATCCTCT CCAACCGTCT GGTTGAGGAG GACGTGCTCA CCTCGATTCA CATCGAAGAG 
CACGAGATCG ATGCCCGTGA CACCAAGCTG GGCGCCGAGG AGATCACCCG GGACATCCCG 
AACGTCTCCG ACGAGGTGCT GGCCGACCTC GACGAGCGCG GCATCGTCCG CATCGGCGCC 
GAGGTCCGTG ACGGCGACAT CCTGGTCGGC AAGGTCACCC CGAAGGGTGA GACCGAGCTG 
ACCCCGGAGG AGCGGCTGCT CCGCGCGATC TTCGGTGAGA AGGCGCGCGA GGTCCGCGAC 
ACGTCGCTCA AGGTGCCCCA CGGTGAGTCC GGCAAGGTCA TCGGCATCCG CGTGTTCTCC 
CGCGAGGATG ACGACGAGCT GCCCGCCGGC GTCAACGAGC TGGTCCGCGT GTACGTCGCG 
CAGAAGCGCA AGATCTCCGA CGGTGACAAG CTGGCCGGAC GCCACGGCAA CAAGGGCGTC 
ATCGGCAAGA TCCTGCCCGT CGAGGACATG CCGTTCCTGC CCGACGGCAC CCCGGTGGAC 
ATCATCCTGA ACACCCACGG TGTGCCGCGT CGTATGAACA TCGGCCAGAT CCTGGAGACC 
CACCTCGGGT GGGTGGCCAA GGCCGGCTGG AACATCAACG TGGCCGGTGC CGACGGCGTC 
CCGGACTGGG CCGAGAAGCT CCCCGAGGAG CTCTACTCGG CACCGTCGGA CAGCATCGTC 
GCCACCCCGG TGTTCGACGG TGCCCGCGAG AACGAGCTGT CGGGTCTGCT CGCCTCCACG 
TTGCCCAACC GTGACGGCGA CGTCATGGTC AACGAGGACG GCAAGGCCGA GTTGTTCGAC 
GGACGCAGTG GCGAACCGTT CCCGTACCCG GTGACGGTCG GCTACATGTA CATCCTCAAG 
CTGCACCACC TGGTGGACGA CAAGATCCAC GCCCGCTCCA CCGGTCCGTA CTCGATGATC 
ACCCAGCAGC CGCTCGGTGG TAAGGCGCAG TTCGGTGGTC AGCGGTTCGG CGAGATGGAG 
TGCTGGGCCA TGCAGGCCTA CGGCGCCGCC TACACGCTGC AGGAGCTGTT GACGATCAAG 
TCCGACGACA CCGTCGGGCG CGTCAAGGTG TACGAGGCCA TCGTCAAGGG CGAGAACATC 
CCCGAGCCGG GCATCCCGGA GTCGTTCAAG GTGCTTCTCA AGGAACTGCA GTCGCTGTGC 
CTCAACGTCG AGGTGTTGTC TTCTGACGGT GCCGCGATCG AGATGCGTGA CGGTGACGAC 
GAGGACTTGG AGCGTGCCGC TGCCAACCTC GGAATCAACC TGTCCCGCAA CGAGTCCGCG 
TCCGTCGAGG ACCTCGCCTA G 

 

Protein sequence

MAVSSQSKSA KAITNNSVPG APNRISFAKL REPLEVPGLL DVQTESFDWL IGADSWRQRA 
TARGDVNPTG GLEEVLTELS PIEDFSGSMS LSFSDPRFDE VKAPVDECKD KDMTYAAPLF 
VTAEFINNNT GEIKSQTVFM GDFPMMTEKG TFIINGTERV VVSQLVRSPG VYFDESIDKS 
TEKTLHSVKV IPGRGAWLEF DVDKRDTVGV RIDRKRRQPV TVLLKALGWT NEQITERFGF 
SEIMMSTLEK DNTAGTDEAL LDIYRKLRPG EPPTKESAQT LLENLFFKEK RYDLARVGRY 
KVNKKLGLNT DKPITSSTLT EEDVVATIEY LVRLHQGDTV MTVPGGVEVP VEVDDIDHFG 
NRRLRTVGEL IQNQIRVGLS RMERVVRERM TTQDVEAITP QTLINIRPVV AAIKEFFGTS 
QLSQFMDQNN PLSGLTHKRR LSALGPGGLS RERAGLEVRD VHSSHYGRMC PIETPEGPNI 
GLIGSLSVYA RVNPFGFIET PYRKVENGVV TDQIDYLTAD EEDRHVVAQA NSPLDDEGHF 
TEDRVLVRRK GGEVEFVSAT EVDYMDVSPR QMVSVATAMI PFLEHDDANR ALMGANMQRQ 
AVPLVRSEAP LVGTGMELRA AIDAGDVVVS EKAGVVEEVS ADYITVMADD GTRHTYRMRK 
FARSNHGTCA NQRPIVDAGQ RVEAGQVVAD GPCTQNGEMA LGKNLLVAIM PWEGHNYEDA 
IILSNRLVEE DVLTSIHIEE HEIDARDTKL GAEEITRDIP NVSDEVLADL DERGIVRIGA 
EVRDGDILVG KVTPKGETEL TPEERLLRAI FGEKAREVRD TSLKVPHGES GKVIGIRVFS 
REDDDELPAG VNELVRVYVA QKRKISDGDK LAGRHGNKGV IGKILPVEDM PFLPDGTPVD 
IILNTHGVPR RMNIGQILET HLGWVAKAGW NINVAGADGV PDWAEKLPEE LYSAPSDSIV 
ATPVFDGARE NELSGLLAST LPNRDGDVMV NEDGKAELFD GRSGEPFPYP VTVGYMYILK 
LHHLVDDKIH ARSTGPYSMI TQQPLGGKAQ FGGQRFGEME CWAMQAYGAA YTLQELLTIK 
SDDTVGRVKV YEAIVKGENI PEPGIPESFK VLLKELQSLC LNVEVLSSDG AAIEMRDGDD 
EDLERAAANL GINLSRNESA SVEDLA