| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3736 |
|---|
| Symbol | |
|---|
| ID | 4483394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 4690559 |
|---|
| End bp | 4691578 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639724492 |
|---|
| Product | 2-nitropropane dioxygenase, NPD |
|---|
| Protein accession | YP_867627 |
|---|
| Protein GI | 117927010 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0040511 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGTGC GCGTCTCTGC GCACAATTTG GCCGCTGCGG TGGCCAATGC CGGGGGCGGT
GGCATTATTG CCACAGTGGC CCTCTCCCTA GCCTCCAAGT ACTACAAAAA GGGACGGGAC
TATTACAAAG CCAACATCAA GGCGTTGACC GATGAGATCC AGTGGGCGCG GGAAAAATCC
CCCCATGGTG TCATCGGTAC CAACTGCATG GTGGCCATTC GCGATTATGA GGCGATGGTA
CGTACCTCGG TTGAGTGTGG CGCGGATATG ATTATCTCTG GGGCGGGGCT ACCGCTGCGC
CTGCCGGAGT TTGCCGCCGA CTATCCCAAA ACCGCCTTGG TCCCCATTAT CTCCTCTTTA
CGGGCGGGTA AACTGCTGGC CAAGCGCTGG TTAAAGACCT ATCAGCGCCT GCCCGATGCC
TTTGTGTTTG AAGATCCTAA CAAGGCCGGT GGGCATTTGG GGGTCTCCCG CGATCAACTG
TATGGCGCGG AACACAGCTC TGAGGTGGTG GTGCCCCAAC TGGCCGAGTG GTCCCAGCAG
GAGTATGGCG GGGATATTCC CATCATCGTT GCGGGGGGTA TCTGGGACCG CCAGGACATT
GATGCCATGT TTGCGCTGGG GGCCAAAGGG GTACAGATGG CCAGCCGCTT TATCTGCACC
TATGAGTGCG ATGCGGCAGA CAGCTTTAAA CAGTCCTTTA TCGACTCTAA AGAGGGGGAT
GTGGTGATTA TCGACTCCCC AGCTGGTCTG CCGGGGCGGG CACTGAGCAC CAACTTTACC
AATGATCTGT TCCGTGGTGA AGAGGTGGGT ATGAAGTGTA TTGCCACCTG CCTGGAGCAC
TGCCGCTGCC GGGATGATAA AGAGACCTTC TGCATTGCCG AGGCGCTGCA CCTCGCCCAG
CAGGGGGATA TGCAAAAGGG GCTGGTCTTT ACCGGCACCA ATGCCACCCG CCATGACCGT
ATCATGCATG TGCATGAGAT TTTTGAAGAG ATCAATGGCC GCCCCTACGT TCCAGCCTAA
|
|---|
| Protein sequence | MGVRVSAHNL AAAVANAGGG GIIATVALSL ASKYYKKGRD YYKANIKALT DEIQWAREKS
PHGVIGTNCM VAIRDYEAMV RTSVECGADM IISGAGLPLR LPEFAADYPK TALVPIISSL
RAGKLLAKRW LKTYQRLPDA FVFEDPNKAG GHLGVSRDQL YGAEHSSEVV VPQLAEWSQQ
EYGGDIPIIV AGGIWDRQDI DAMFALGAKG VQMASRFICT YECDAADSFK QSFIDSKEGD
VVIIDSPAGL PGRALSTNFT NDLFRGEEVG MKCIATCLEH CRCRDDKETF CIAEALHLAQ
QGDMQKGLVF TGTNATRHDR IMHVHEIFEE INGRPYVPA
|
|---|
| |