| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2592 |
|---|
| Symbol | |
|---|
| ID | 4482217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 3294156 |
|---|
| End bp | 3294986 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639723339 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_866497 |
|---|
| Protein GI | 117925880 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2801] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000687739 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGC CTGATCACCC ACGGCTCAGC ATTCTACGAC AGTGTGCGCT CGTCAGTCTC
AGTCGATCCT CATTCTACTA TCAAGAGAAA GGCGAAAGTC CTCTCAACCT GAAACTGATG
GAGTTGATTG ATAGGCAGTT TATGGAGACC CCCTTCTATG GGGCTCGTCA AATGGCTCGT
CATCTTCGTA ATCATGAGGG CTATTGTGTT GGGCGCAAGA AGATATGCCG ATTAATGGCC
AAGATGGGAT TGGTCCCGAT ATATCAAAGG CCTCGCACGA CCAAACCTCA TCCAGAACAC
GTCAAGTACC CATATTTATT ACGGGATCTG GTGATAGATA AGCCCAATCA GGTCTGGTGT
ACTGACATTA CCTATATTCC GATGCGGAGA GGGTTTCTCT ATCTGGTTGC GATTATGGAT
TGGCATAGTC GCTGTGTACT CTCCTGGCGA CTCTCCAATA CGATGGAGGC CGATTTCTGT
GTTGAGGCCT TGGAGGAGGC TTTAAACAAG TTCGGAAAGC CAGAGATTTT CAATACGGAT
CAGGGCAGTC AGTTTACCAG CCAGAGTTTC ACTGAGACAC TCAAAGAGGC TGATATAAAG
ATATCTATGG ACGGCAAAGG AGCATGGACG GATAATGTGT TTATTGAGCG TCTCTGGCGT
TCTTTGAAGT ATGAGTGTGT TTACCTGCAT GCCTTCGAGA CAGGTTCAAA AGCTCATCAT
GGAATCGGCC ATTGGATCCA GTTCTATAAT GAACGTAGGC CACATTCATC TTTAGGCGGC
TTGTCCCCCA ACTCGGTCTA CGAAACTGAG CTGTGGAGTG AGGCTGCATA A
|
|---|
| Protein sequence | MIKPDHPRLS ILRQCALVSL SRSSFYYQEK GESPLNLKLM ELIDRQFMET PFYGARQMAR
HLRNHEGYCV GRKKICRLMA KMGLVPIYQR PRTTKPHPEH VKYPYLLRDL VIDKPNQVWC
TDITYIPMRR GFLYLVAIMD WHSRCVLSWR LSNTMEADFC VEALEEALNK FGKPEIFNTD
QGSQFTSQSF TETLKEADIK ISMDGKGAWT DNVFIERLWR SLKYECVYLH AFETGSKAHH
GIGHWIQFYN ERRPHSSLGG LSPNSVYETE LWSEAA
|
|---|
| |