| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2511 |
|---|
| Symbol | |
|---|
| ID | 4482486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 3200931 |
|---|
| End bp | 3201995 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639723259 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_866417 |
|---|
| Protein GI | 117925800 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0216385 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.245234 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGTT CTTTAATCGT GGCGGTGGTG TTGGCCATGG CAATGGCGGT TTGGTTAGCG
GGTGGCCAAC AGGTGCGGGC CAAGCAGGCC GCCCCCTCGG GGGTTAAAGG GGGGGAGCCC
GCGCTGACGT TGCCCCGTGT TCAAGTGAAA CAGTTTGCCT TGCAGAGCAT CCAGCGTGAG
ATTGTATTGC AGGGGCAGAC TCAGCCCCTG CGGGTGGCAA CCTTAAAAAG CGAGACCACC
GGCAGGGTGG TGGCGCTGCC CGCCGAGCGT GGTCAGCGCG TTGAGCTGGG GGCGGCATTG
GTCCATTTAA GCCCAGAGGA TCGTGGCGCA CGCCGTCGTT TGGCCCAAGC GGGTGTGGCC
CAAGCGGAAG CGGCTTTGTT TGCGGCAAAA GCATTGAACA AAAAGGGGTA TCAGGCCGAT
TTGCAGGTTA AAGAGGCCAA TGCCCAACAA CAAGGCGCGC TGGCAGAATT GGCGGCGATT
GAGTTAGATA TTCAGCACAC AATCTTGCAG GCTCCCTTTG CGGGGGTGGT GCGAGAGCGG
TTTGTGGAGC TGGGTGAATA TGTCGCGCCT GGGGATGCGG TGGTGGAGTT GTTGGATGAT
AGCAGCGTCA AAGTGGTGGC CGATCTACCC CAGCAAAAGT TGAGCAGCAT CCATGTGGGT
ATGGTTGGGC AAGCAAACTG GCTGGATGGC CGTCGTCGCT CGGGGGCGGT AGGGTACATC
AGCCCTCTGG CCGATGCGCA AACCCGTACC TATAGGGTGG AGTTACGCGT GGACAACCCC
GATGGCACGC TACCCTTAGG AGCCAGCGTG GAGATTGTAT TGAGTTTGGG CGCGGTGCAG
GCGCACCATC TTTCCCCCGC GCTGCTTAAT CTGGATGCCC ATGGTAATTT GGGGGTCAAA
GCGGTGGATG CCCAGCAACA GGTGGTGTGG TATGGGGTTC AGGTGGTGCA GGCTGGGTTG
GATGGTATTT GGGTGACGGG TCTGCCCGAA GGTGTCTCCA TTATCACCCT GGGGGGTGGT
TTTGTGAAGG TGGGCCAGCA GGTAACCCCC CGTCAAAGCT CTTAA
|
|---|
| Protein sequence | MQRSLIVAVV LAMAMAVWLA GGQQVRAKQA APSGVKGGEP ALTLPRVQVK QFALQSIQRE
IVLQGQTQPL RVATLKSETT GRVVALPAER GQRVELGAAL VHLSPEDRGA RRRLAQAGVA
QAEAALFAAK ALNKKGYQAD LQVKEANAQQ QGALAELAAI ELDIQHTILQ APFAGVVRER
FVELGEYVAP GDAVVELLDD SSVKVVADLP QQKLSSIHVG MVGQANWLDG RRRSGAVGYI
SPLADAQTRT YRVELRVDNP DGTLPLGASV EIVLSLGAVQ AHHLSPALLN LDAHGNLGVK
AVDAQQQVVW YGVQVVQAGL DGIWVTGLPE GVSIITLGGG FVKVGQQVTP RQSS
|
|---|
| |