| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2409 |
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| Symbol | |
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| ID | 4482178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 3075625 |
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| End bp | 3076659 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639723157 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_866315 |
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| Protein GI | 117925698 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.551754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.145723 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAATC CCATCATTCG CCCCTTTGAC CATGATATTG ATCTTAACGG CCAATCCATC
TTGGTCACGG GCGGCACCGG CTCCTTTGGG CGCCATTTTA TCAAGCATGT GTTGCAACAC
TTCAAACCCA AGCGCTTGAT CATCTACTCC CGCGATGAGC TCAAGCAGTA TGAGATGCAA
ACCGATCCCG CCTTTATGGG CCATAAATGC CTGCGCTTTT TTATTGGCGA TGTGCGGGAT
CGTGCCCGTC TGGAAAGCGC CCTGCGCGAA GTGGATTATG TTATCCACGC CGCCGCCCTT
AAACAGGTGC CCACCGCCGA ATATAACCCC ATGGAGTGCA TCCATACCAA TGTCATGGGG
GCAGAAAATG TGGTGCAAGC CTCGTTAGCC AACGGCATCA AGCGGGTTAT TGCACTCTCC
ACCGACAAGG CCGCCAACCC CATCAATCTG TATGGGGCCA GCAAACTCGC CTCGGACAAA
ATTTTTGTGG CCGCCAACCA TTTGAGTGGC AGCATTGGCA CCCGTTTTTC GGTGGTGCGC
TATGGCAACG TGGTGGGTTC CCGTGGTTCG GTGGTGCCGC TGTTTCAGCG GTTGGTGGCG
GAGGGCGTGA CCGAACTGCC CATTACCGAC ATCCGCATGA CCCGCTTCTG GATCACCCTG
GAGCAGGGGG TTAATTTTGT GCTCTCCAGT CTGGCCATCA TGCGCGGGGG TGAGGTGTTC
ATCCCCAAAA TCCCCAGCAT GCGGGTGGTG GATTTGGCCA CCGCCTTAGC CCCCAACACC
CCCCACAAGG TGGTGGGCAT TCGCCCTGGC GAAAAGCTGC ATGAGGTGAT GATTACCGAA
GATGATGCCC GTAACACCGT GGACCTCGAT GATCGCTATG TTATCGAACC CACCGTAGTC
GAGTGGTCCC GCCGCTCTTT TCTACTGGAT GACGGGAAGC CGGTGGATGA AGCCTTTAGC
TATACCAGCG ATAGCAACAC AGAGTGGCTC GACCGTGAAA ATCTCTTCAC CATGTTGGCA
CAGAGCGGCA AATGA
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| Protein sequence | MPNPIIRPFD HDIDLNGQSI LVTGGTGSFG RHFIKHVLQH FKPKRLIIYS RDELKQYEMQ
TDPAFMGHKC LRFFIGDVRD RARLESALRE VDYVIHAAAL KQVPTAEYNP MECIHTNVMG
AENVVQASLA NGIKRVIALS TDKAANPINL YGASKLASDK IFVAANHLSG SIGTRFSVVR
YGNVVGSRGS VVPLFQRLVA EGVTELPITD IRMTRFWITL EQGVNFVLSS LAIMRGGEVF
IPKIPSMRVV DLATALAPNT PHKVVGIRPG EKLHEVMITE DDARNTVDLD DRYVIEPTVV
EWSRRSFLLD DGKPVDEAFS YTSDSNTEWL DRENLFTMLA QSGK
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