| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1986 |
|---|
| Symbol | |
|---|
| ID | 4483206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 2464162 |
|---|
| End bp | 2465463 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639722730 |
|---|
| Product | RNA-directed DNA polymerase (Reverse transcriptase) |
|---|
| Protein accession | YP_865894 |
|---|
| Protein GI | 117925277 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3344] Retron-type reverse transcriptase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.289767 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAA CGTCTATTAG GCTGCAGGAT CTGAGAAGGA AGATATACCG CAAAGCGAAG
ATTGATAAAT CTTGGCGATT TTGGGGATTG TATCATCATG TTTGCAAGCC AGAAACACTC
AACACAGCCT ATGAGATGGC AAGGAAGAAC AAAGGAGCTC CAGGAATTGA TGGGGTTACG
TTTGAGGCTA TCGAAGAAAG TGGTGTTGAA CAATTTCTTG GTGAGGTGAG GAAAGAATTG
GTTTCAGGTA GCTATCGTCC TTTAAAGAAT CGCAGAAAAG CGATTCCGAA AGGTGATGGC
AAAGAGCGTG TTCTTGGGAT TCCGTCGATC CGTGATCGAG TAGTCCAAGG GGCGCTAAAG
TTAATCCTGG AACCCATCTT TGAAGCTGAT TTTCAATCTG GATCCTATGG ATACCGTCCG
AAACGGATGG CTCATCAAGC GGTAAATCGT GTCGCTATAG CCATAGCCCA AGGGAAGACG
CAGGTTATTG ATGCTGATTT GAAATCATAT TTCGATACGG TTCAACATGA TCTGGCTCTT
CGGAAAGTGT CGGAACGAGT TGATGATGAT CAGGTTATGC ATCTTCTCAA GCTCATTTTC
AAGACCAGTG GAAAACGGGG TGTTCCCCAA GGCGGTGTGA TTTCACCTTT GATCAGTAAT
CTCTATCTCA ATGAGGTAGA CAAGATGCTG GAAAGGGCTA AGGAAGTTAC CCGGAAAGGG
AAATACACGC ACATAGAGTA TGCCCGTTTT GCGGATGATC TGGTAATTCT TGTGGATGGC
CACCATCGGT GGAACGGCTT GGCACGAAAG GTATACCAAC GTCTTGGTGA GGAATTAGCT
AAATTGAAAG TTCAACTAAA CCTTGAGAAA ACCCGTGTGG TGGATTTGAC CCGAGGAGAA
GACTTCACTT TCCTTGGTTT CAATATTCGG CAGCGGATGA CTCTCCAGGG CAAGCAAGGG
GTTTTATGCA TCCCTCGCAT GAAGGCGAGA ACAAGTCTGC TGGGAAGGCT CAAGGAGGTG
TTCAAGCACC TACGTTCCCA GCCGACAGAA TGGGTAGTTA ACACTATCAA CCCAATACTT
CGGGGTTGGG TGAGCTACTT TCGGATTGGA AATTCCAGCC GATCATTCAA TTTTGTTCGA
AACTGGGTTG AACGGAAGAT GCGTCGCCAT TTGATGAGAG CCAGAGTACG CCGAGGTTTC
GGCTGGAACC GGTGGAGTAG GGATTGGCTG TATAAATCAC TGGGCCTATT CGGCGATTAT
AGAGTGGTTT ATTACCAACC TAAAAGCACG ACCAGCAGAT AG
|
|---|
| Protein sequence | MIKTSIRLQD LRRKIYRKAK IDKSWRFWGL YHHVCKPETL NTAYEMARKN KGAPGIDGVT
FEAIEESGVE QFLGEVRKEL VSGSYRPLKN RRKAIPKGDG KERVLGIPSI RDRVVQGALK
LILEPIFEAD FQSGSYGYRP KRMAHQAVNR VAIAIAQGKT QVIDADLKSY FDTVQHDLAL
RKVSERVDDD QVMHLLKLIF KTSGKRGVPQ GGVISPLISN LYLNEVDKML ERAKEVTRKG
KYTHIEYARF ADDLVILVDG HHRWNGLARK VYQRLGEELA KLKVQLNLEK TRVVDLTRGE
DFTFLGFNIR QRMTLQGKQG VLCIPRMKAR TSLLGRLKEV FKHLRSQPTE WVVNTINPIL
RGWVSYFRIG NSSRSFNFVR NWVERKMRRH LMRARVRRGF GWNRWSRDWL YKSLGLFGDY
RVVYYQPKST TSR
|
|---|
| |