| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1949 |
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| Symbol | |
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| ID | 4481177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 2423617 |
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| End bp | 2427411 |
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| Gene Length | 3795 bp |
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| Protein Length | 1264 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639722699 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_865863 |
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| Protein GI | 117925246 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0004] Ammonia permease
[COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00836] ammonium transporter |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.354443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGATA AATCATTATT AGATCTACTG TGGGTTACGT TATGCATCGG TTTGGTGTTG
CTGATGCAGG CTGGTTTTTT ATGTCTTGAA AGTGGCCTAA CCCGCTCTAA AAACAGCATC
AACGTGGCGA TGAAAAATCT GGTGGATTTT TCGGTCTCCG TCACGGCCTT TTTGGCCCTT
GGTTACCCTT TAATGTTTGG CACTTCTATG GAAGGATGGC TAGGCTGGGG TACCCCCTTT
TCCATTGGTT CGGAAGAGCC TTTGCAGATG GTCTTTTTCC TCTTTCAAGC GATGTTTTGC
TCAACGTCGG TCACGATTGT CTCGGGGGCG GTTGCGGAGC GCTTGGGGTT TCGTGCCTAC
CTGTTTTTAG CCGCAGGCAT GGCGTTGCTC ATTTATCCTA TCGTTGGGCA TTGGGCCTGG
AATGGCCTAG ATCGTGGTCT CTCCCTGGGT TGGTTGGGGC AGGCGGGGTT TGTAGATTGG
GCGGGTTCTA CGGTGGTGCA TGCGGTGGGG GGGTGGTTTT CGTTGGCGCT GTTGCTGGTG
ATTGGGCCGC GTACCGGGCG GTTTAATCCC GATGGTTCGG TCAACCCCAT TACGGCATCA
AATCTTCCAT TGACCACCTT GGGTGCCTTG ATTTTATGGT TTGGTTGGAT CGGTTTTAAT
GGCGGTAGTA CCCTTAGTTT GGATGCCCGT ATTGGGCCGG TGGTGTTGGC GACCTGCCTG
GGTGCGGTTG GGGGCAGCAT GGGAGCGCTG CTGTGGAGTT GGTGGCGTGA AGGACGGCCC
AGTGTGCTTT CTGCCATTAA TGGCACCCTC GCTGGGCTGG TTGCGGTAAC GGCTGGGGCC
CATGCCTTGA GCCCTCTAGC TGCATTAGGT GCGGGCCTGT TGGCGGCTCC TGTGGCGCTG
TTGATGGAAA ATTGGATGCT CCGCCATGGC ATTGATGATG CGGTGGGGGC CGTACCGGTA
CATTTGGGTG CGGGGGTGTG GGGTACCCTG GCGGTGGCAC TGTTGGGGGA TTTGCACAAG
CTGGGTACCG GACTAAGCCG CCTAGAGCAG CTTTGGGCGC AGTTACAAGG GGTTTTGGCT
GCGGCGCTGG TGGCGTTTGT CATTCCTTGG TTGGTATTGC GCGTGATTAA TCGGCGTTTT
CCCATGCGGG TAACGCCGGA GCAAGAGTGG CAGGGGCTCA ACATCTCAGA GCACGGCACG
CAGACGGAGT TATCCAGTTT TCTAGGGGTA CTGCGGGCGC AAGCCGAGGG GGGGGATCTG
AGTCTGCGGG CTGAGGTTGA TCCCTTTAGC GAGGTTGGTT TGATTGCCGA CCGTTATAAC
CATGTGATGG ATGCCATGGA AGCGGCGGTT GCTAAGACAC GTGCGGTCTT TCAAACCGCC
GGAGACGCCA TTTTAATCAT CGACCCTCAC AGTGGCCAAA TTACCGCGCA CAATCCAATG
GCCGAAGCGG TGTTTGGGCG TAGCAGTGCG GCCTTTGCCC ATCTTACCCT AAGCGATTTA
GTGGTTGGGG TTACGCCCCA GCGTTTTTGG CTGGGCCTGC ATGAGGAGGG GGAAGGGCGG
CTGCCCGATG GTCACACCTT TCCACTGGAG CTCGCCATTA CCCGCGCTTC GCATGGGGAC
GGTGAGATGC TGATTGGCAC TTTCCGTGAT ATTCGCGCAC GCAAACAGGC CGAGTTAGCC
ATTAAAGCCA GTGAGGCGCG GTTTCGCACC CTGTTTGCCA GTGCGGCACT GGGTATGGCC
TTAATTGATG CCAAACAACG GGTGGTGGAT GCCAATCCCG CATTGATGCA AATGTTGGAA
CTCTCCCACC ATCGCGATGC CCTGCCACCC TTAGCCCAAC TGGCCCATCC GCAGGATCAA
CAAGAAGTGG CGGCACGCTT GGACGCTGTG ATAGAGGGGC GCTCGCCGCA AGAAAATTGC
GAAGTGCGCT GCCTGTGCGA GGCACGCCAT TTGACCATTT GGACCCGCAT GGTGATCTCC
CCTATTGTGT TGGAGAGCAA CCTAACGCCC ATGGTGGTGG TTATTGTTGA GGATGTCACC
CAACGCCGCC GCAGTGAGGA GGCGTTGCGT TTGGCGGCAA CGGTTTACGA AAGCACCAAC
GAGTCGGTGG TGATTTTTAA TGGTGAGGGG CGGGTAGAGC AGGTCAATCA AGCCTTTTGT
CGCTTGTCGG GTTATACCGC TCGCGAAGTG CGGGGGTTAG AGTTACGCCA TCTTCTCTCC
GCCCGCTATG AAAAGAGCCA GTTTGATGAG ATGGCCCAAG CTTTGGCCTT AACCGGTCAC
TGGAGTGGCG AGGTCATGGG CCAGCGCAAG CAGGGGGCGT TGGCCTCTGA GCGGCTTTCG
CTGTCACTGG TGCGGCGCCC CGATGGTAGC ACTCAGAACA CCATTGCGGT TTTTACCGAT
TTAACCGAAC AAAAAGCCCA GGAGGAGCTG ATTTGGCGGC AGGCCAACTT TGATCCCCTT
ACCAGCTTGC CCAACCGTCG GCTGTTTCAA GATCGCTTGC ATCAAGCACT GGCCCAGGCG
GACCGTTCTG CGGGTCGGGT CGCGCTGTTT TTTTTGGATC TGGACCGGTT TAAGCCCATT
AATGACACCA TGGGCCACCA AGCAGGGGAT GAGCTGCTGC AAAAATGCGC CGAGCGGATT
AATGCAGCTG TGCGTAGCAG CGATACGGTG GCCCGTTTGG GGGGGGATGA GTTTACGGTG
ATCCTACCCA ACATTCAAAA TGGTCAGGAT CTTTCGCGCA TTGCCGAGGG GATTATAAAA
ACCCTAACGG AGCCCTTTTA TCTGAAGGCG GGCGAGGCCA ACATCTCGAC CAGTGTTGGG
GTGGCGGTCT ATCCTGACGA TAGCCAAGAT GATGAGGGAT TGATGCGTGC CGCCGATGCC
GCCCTTTATC AAGCCAAAGA TCATGGTCGT AACAATGTGC AGTTTTTTAC CGAATCCCTA
AATCAACAGA TTTTAGAGCG TATCGCCCTA GAAAAGGGGC TGCGACGCGG CTTAGGGGCG
GGTGAGCTGT TTCTTGTTTA CCAACCGCAG GTGGAGGTTA GCAGCGGTCG CCTCTCCGGG
GCCGAAGCGC TGGTGCGCTG GCGTTTGCCC ACCGGTGAAG TGGTGATGCC AGACCGTTTT
ATCCCCATGG CCGAAGAGAG CGGGCTGATT GTACAGGTGG GTGAAGTGGT GGTTTCGTTG
GCGGTGCAGC AGATCCGGGC GTGGTTAGAT GCCGGTTTTG AGCCGCCTCG TATTAGTATT
AATGCCTCGC CCAAGCAGTT TCACCTGGAT GGTGGTGGTT TAACTTCGAT ATTGATGTCC
ACATGTGATG CTTATCAAAT TTCACCCTCT CGCTTGGCGG TGGAGATCGT TGAAAGTGGT
TTAATGGCGA ACCCTGAGCG TTCAGGTGAG ATTTTAGCCG GTTTGGCCAA ATTGGGGGTG
GAGGTGGAGC TCGACGATTT TGGTACTGGC TACTCATCGT TAGCGCGGCT AAGCCGCTTA
CAAATTCAAG CCTTAAAACT GGATCGCCGT TTTTTGGTGG GCATTCCAGA AGATCCCCAA
AACCGAATCT TGGTAACAGC CATGGTACAG ATGGCTCGGG GTATGGGCAT TGAGGTGATT
GCCGAAGGGG TGGAAGATCT GCGGCAGATG GGCTTTTTAC AAGACCTGGG GTGCCATCGT
GCCCAAGGGT TTGGCATTGC TCGACCGATG GAGCCCGAGG CTTTTGTGGT GTTCTGTCAA
ACACCAAAGC TGGAACACCC CCCGTATGGT AACTGCATCG TCGGGTGGGC GGCACCTGAA
CCGGTGCGCA CCTAG
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| Protein sequence | MLDKSLLDLL WVTLCIGLVL LMQAGFLCLE SGLTRSKNSI NVAMKNLVDF SVSVTAFLAL
GYPLMFGTSM EGWLGWGTPF SIGSEEPLQM VFFLFQAMFC STSVTIVSGA VAERLGFRAY
LFLAAGMALL IYPIVGHWAW NGLDRGLSLG WLGQAGFVDW AGSTVVHAVG GWFSLALLLV
IGPRTGRFNP DGSVNPITAS NLPLTTLGAL ILWFGWIGFN GGSTLSLDAR IGPVVLATCL
GAVGGSMGAL LWSWWREGRP SVLSAINGTL AGLVAVTAGA HALSPLAALG AGLLAAPVAL
LMENWMLRHG IDDAVGAVPV HLGAGVWGTL AVALLGDLHK LGTGLSRLEQ LWAQLQGVLA
AALVAFVIPW LVLRVINRRF PMRVTPEQEW QGLNISEHGT QTELSSFLGV LRAQAEGGDL
SLRAEVDPFS EVGLIADRYN HVMDAMEAAV AKTRAVFQTA GDAILIIDPH SGQITAHNPM
AEAVFGRSSA AFAHLTLSDL VVGVTPQRFW LGLHEEGEGR LPDGHTFPLE LAITRASHGD
GEMLIGTFRD IRARKQAELA IKASEARFRT LFASAALGMA LIDAKQRVVD ANPALMQMLE
LSHHRDALPP LAQLAHPQDQ QEVAARLDAV IEGRSPQENC EVRCLCEARH LTIWTRMVIS
PIVLESNLTP MVVVIVEDVT QRRRSEEALR LAATVYESTN ESVVIFNGEG RVEQVNQAFC
RLSGYTAREV RGLELRHLLS ARYEKSQFDE MAQALALTGH WSGEVMGQRK QGALASERLS
LSLVRRPDGS TQNTIAVFTD LTEQKAQEEL IWRQANFDPL TSLPNRRLFQ DRLHQALAQA
DRSAGRVALF FLDLDRFKPI NDTMGHQAGD ELLQKCAERI NAAVRSSDTV ARLGGDEFTV
ILPNIQNGQD LSRIAEGIIK TLTEPFYLKA GEANISTSVG VAVYPDDSQD DEGLMRAADA
ALYQAKDHGR NNVQFFTESL NQQILERIAL EKGLRRGLGA GELFLVYQPQ VEVSSGRLSG
AEALVRWRLP TGEVVMPDRF IPMAEESGLI VQVGEVVVSL AVQQIRAWLD AGFEPPRISI
NASPKQFHLD GGGLTSILMS TCDAYQISPS RLAVEIVESG LMANPERSGE ILAGLAKLGV
EVELDDFGTG YSSLARLSRL QIQALKLDRR FLVGIPEDPQ NRILVTAMVQ MARGMGIEVI
AEGVEDLRQM GFLQDLGCHR AQGFGIARPM EPEAFVVFCQ TPKLEHPPYG NCIVGWAAPE
PVRT
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