| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1660 |
|---|
| Symbol | |
|---|
| ID | 4480722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2062552 |
|---|
| End bp | 2063655 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639722403 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_865575 |
|---|
| Protein GI | 117924958 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.536642 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTCTC CGGTGTCTGA ACAGAATGGG TGGCAAGAGC CTGAAGAAAA ACATGCCGTT
GCGCGGCTTG CCGATGGGGT TAAAGGGGCC TTGGCACTCT TTTTAGCGTC GCCTTTTATT
GTGTTTTTAG TGATTTTGTG GCCCATCTAT CGGTGGGCTG AAATGAAAGA GGGTAACCCC
CCGCCAGAGC CATTTTGGAA TCCCTTTCTG GAGCGCTATT TTCCCCACCG GGCCTATAAA
AAAGAGCTGC CACAACTAGA ACCCTTCGAG CGGGAACAGC GGCGTGCCGC CTACCGTGAA
GCCGCTTTGG CCGCAGCCAG CACCCCGCAG CCGGTGGAGA GCCATGGCTT TGTGCTGGCC
CCCAATGCCC CGCAAACCGA GGGTGCGGAG CGGGTGGCGC TGGTCACCGG TGGCAGCAGT
CAACTGGGGC AGGCCATTGT GCAGGCGCTG ATGGAACAAA ATTACCGCGT CGCGCTGGTC
TGTTTTGAGT CAGACGCGAC GGCGATGATC CAGCGTTACC CCATGCAAGA GGCTAAAATA
CAAAGTTTTA CGTGTGATTT GCGTAATCCC GAAGCCATTG AAACGCTGGT GGGGCAGGTG
GTGCGCCACT TTGGGCAGTT GGATGTGGTG GTGCATAATG CCGCACGTTT TGAGCCCGAC
CATGAAGAAA ACCCAAGCTG GCAGAGCCTG GAGAATCTTT TTAAAGTTAA TGTCATGGGA
CCCTTATGGT TATCCCTTAA GGCAGCCCCC TGGATGCGCA GTGGCCCTGC GGGGGGGGGA
CATATTATTC AAATTGGGGA TATTTGGGGG GAACGGCCCT TGCTGGGTTA TAGTGGTTAT
AGCAGCAGTA AAGCGGCGCT GCATATGGCG GGTCGCTCTT TGGCGCGGGA GTTGGCCCCC
GAAATTCGGG TCAATACCAT CGCCCCAGGT GCGGTGTTTC CCCAAGGGGA GGATGATCGG
GCTTACCAAG TGCTGCTGTC GAACACCCCC TTGGCCGCAG AGGCAGGACC GCTGGGGGTG
ATTACCGCCC TTAACTATCT GTTGGCCACC CCGTTTGTGA CCGGACAGGT GCTGCATGTG
GATGGTGGTC GGCTGCTGCG TTAA
|
|---|
| Protein sequence | MESPVSEQNG WQEPEEKHAV ARLADGVKGA LALFLASPFI VFLVILWPIY RWAEMKEGNP
PPEPFWNPFL ERYFPHRAYK KELPQLEPFE REQRRAAYRE AALAAASTPQ PVESHGFVLA
PNAPQTEGAE RVALVTGGSS QLGQAIVQAL MEQNYRVALV CFESDATAMI QRYPMQEAKI
QSFTCDLRNP EAIETLVGQV VRHFGQLDVV VHNAARFEPD HEENPSWQSL ENLFKVNVMG
PLWLSLKAAP WMRSGPAGGG HIIQIGDIWG ERPLLGYSGY SSSKAALHMA GRSLARELAP
EIRVNTIAPG AVFPQGEDDR AYQVLLSNTP LAAEAGPLGV ITALNYLLAT PFVTGQVLHV
DGGRLLR
|
|---|
| |