| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1651 |
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| Symbol | |
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| ID | 4484028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 2049751 |
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| End bp | 2053347 |
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| Gene Length | 3597 bp |
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| Protein Length | 1198 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639722394 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_865566 |
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| Protein GI | 117924949 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0949353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.53283 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGATC CCATCACCAT ACAAAAATTG CTGGATAAGC TTGACGGGCG CAAGAGCCCG
CTCATTTTAC CTGAACTGAC CACTGGGGCT TCCAGTTGGT TGGCGGTGGA GTTGGCCTTG
ACGCAACCGG CTCCGGTGGT GCTGGTTACG GGCAAAGTTC AGCGGGCGGA ATCCATCGCT
CGTGAACTTC TTTTTTTCGG TGCCCAGCGC GGGGTCCATA TCCTCCCTTT TCCCGCCTGG
GAGACGCTCC CTTTTGAGCC CCTCTCCCCT TACGGCCCCC TCGTGGGGGA TCGCTTAGCC
ACCCTTTCAC GCTTGATTGG GTTGGGCAAG TCGGGTCCCA TTTCCATTGG TAATGAGCTG
GGGGATAGTC GCACGGTGGT GATCACCACC CCAGCGGCCA TCATGCAACG GTTGATGCCA
AAAGCGGTAT TGGCCCGTTA TGGTTTTGCC TTTTCGGTGG GGGATCAGCT TAATTTACCG
CAATTTCGTG AGCTATTGAC CCGCTCGGGG TACAACCCGG TTTCGCAGGT GTCGGAGCCT
GGGGAGTATG CGGCGCGTGG GGGATTGATT GACCTCTTCC CCCCCGGTCG GGATGAGCCG
GTACGGGTCG AGTTGTTTGG CGATGAGGTC GAGAGTATCC GCCTGTTTGA TCCAAGCAAT
CAGCGCTCTT TAGACCCCAT ACCTGCGGTA GAGGTACTCC CGGTGCGGGA GGTTATTCTT
AATGCCGACA CGATAAGCTG TTTTCGCACT GCTTATCGTG AGGTATTTGG GGGCTATGCG
GCGGAGGATT TGATCTACAA AGAGATTTCT CAAAACCGTA CTTATCAGGG TATGGAGCAG
TATCTACCGC TCTTTTATCC TGATCTGGAC ACCCTCTTTG ATTATCTCCC CAAGCAGACG
CTGTTTTTGA TGGAACCCGA TGTACCCAAC CAGATTGAAG AGCGTGCGCG GGAGATTGAG
GATCAACACC GTATCGCCTA TCAGGCGGGC CAAGGCAATG AAAAGGGCTA TGATGGCAGT
AGCATGCGCT GCATTGCCCG CAACACCCTT TATTTAGATC AAAGAGAGCT GACGGAACGC
CTTAAACCCT ACCCGCAACT CTTACAAAGC GCCACGGGCA AACCGGCTCT GGACCTGGAT
CTACACCCCA TCCCCCCCAT TCAGGAGGGG GTGCAGGGTG CCGACCATAG CCAACAGGAT
GAGAAAAAAG CCACCGCCAC GGTCATGGAT CGCCTCTGTC GTCAGATCAG CTTATGGCAA
AAGGAGCAGC GCCGCATCGG TTTTGTTTCT CGCACCATCG GCCAGCGGGA GCGCATGCGG
GAGCTGCTGA CCGACCATAA GGTGAGCGTG GTGGATGGCT CCAGTTGGTC CGCGTTGCTG
CAAGCGGACC CCAGACAGCC CATGCTGCTG CTGGGGGATG TAAGTGATGG TTTTGAACAT
CCCACCCGCC ATGTGGTGCT GATTAGTGAA GACAATGTTT TTGGGGTACG CATACGCCGC
CGTCAGATAA GCCGTCGTTA TTTGGATCAG TTAATCGCCA GCTTTGCCGA CCTTAATGAA
GGCGATGCTG TGGTCCATGT GGATCATGGG GTGGGTCGTT TTGGGGGGCT GGTATCGCTG
GAGGTTGGTC AGCTTAAGAA TGATTTTTTG CTGATTATCT ATGCCGACGG CGACAAGCTG
TATGTCCCTG TCGAGAACCT GGACCGGGTT GGTAAGCACT CTTCGGGTGA AGAGGTGCAG
CTGGACAAAC TGGGGGGCAA ACGTTGGGCC AAGACCCGCG CCAAGGCGCG TAAGAAGATT
TTGGAGATGG CTGAAGAGCT GGTGGCCATT CAAGCCCAGC GGGAGGCCAC CCAAGGGGTG
GTTTATTCGG GGCCGGATGC CCTTTATCAG GAGTTTGCCA GCACCTTCCC GTTTGAAGAG
ACGGTGGACC AGGCCAAAGC CATTGAGGCG GTGTTGGAAG ATATGGCCTC ACCCAAAGCG
ATGGATCGGC TGGTGTGTGG TGATGTAGGC TTTGGCAAAA CCGAGGTTGC GCTACGGGCG
ACCTTCCGCG CAGCGATGGA TGGCAAACAG GTGGCGATTT TGGTGCCTAC CACCATTTTG
GCCCAGCAGC ACTATGAAAA TTTTGCCAAG CGGCTGGCGG GCTACCCTAT TAAGGTGGAC
ATTCTCTCGC GGTTTCGCAC ACCAAAAGAG CAAAAGGCCA CCATAGAAGC GGTTGGCCAT
GGCACGATTG ATGTCATTGT GGGCACTCAT AGGCTGCTGC AAACGGATGT TAAATTTAAG
GATCTTGGTC TGCTGGTGGT GGATGAGGAG CAACGCTTTG GGGTGAGCCA TAAGGAGCGC
ATTAAAAATC TTCGCGCTAC TTTGGATATT TTGACCCTTA CCGCTACGCC CATTCCCCGC
ACCTTGAACA TGGCCATGGC GGGGGTGCGC GATATTAGTA TTATTGCCTC TCCCCCAGCG
GACCGGTTGG CCATTCGCAC CATTATTACC CACTACGATA AGCAGCAGGT GCGTGAAGCG
ATTTTGCGGG AGCTCTATCG GGGGGGACAG GTTTTTTATG TTCACAATCA GGTGCAGGAT
ATTGAGCGCA AAGCACAAGA GATTGCGGAA CTGGTACCAG AGGCCCGGGT GGGTGTAGCC
CATGGTCAAA TGCGGGAAAA CCAGTTAGAG AAGGTGATGA TGGAGTTTTA CCGTCAAACT
TTCAACATTC TGGTATGTAC CACCATTGTG GAAAACGGCG TGGATATTCC CACCGCTAAT
ACCATCATTA TTGATCGTGC CGACAAATTT GGTCTGGCTC AACTACACCA ACTGCGGGGA
CGGGTGGGAC GCAGCAAGCA TCGCGCTTAC GCCTATATGT TGGTGCCCCA TTTACGGCGC
TTAACCAAGC ATGCCGAAAA ACGCTTGGAG GCGCTGGAGA GCCTGGGTGA GCTGGGGGCA
GGCTTTATGC TGGCGACCCA TGATTTAGAG ATCCGGGGTG CGGGTAACAT TTTGGGCGAT
GAACAATCTG GGCAGATCAA AGAGGTTGGT TTTGAGTTGT ACAATCAGAT GCTGCGGGAG
GCGGTGGTGG CCCTGCAAAC GGCCCGGGCC CAAGGTCGGG ATTTGGCCTC TACCACCCCT
CTGGGGCAGG CTCCAGTGGA TGAAGGTCCC GCACCGGTGG TACCCAGCAT CAACCTGCAT
CTTTCCACCT ATATTCCCGA GGAGTATGTG GAGGATGTGC ATCAGCGTTT AACCCTCTAC
AAGCGCATTG CTGAACTCAA AACCTATGAG GAGTTGCAGG AGATGCGGCT GGAGTTGGCG
GACCGTTTTG GTCCCCTGCC CGCAACGGTG GACCATTTGC TTTCGGTGAT GGAGATCAAA
CGTCTCTGCG TTAAACTGCG CATTATCAAA CTGGATGCAG GCCCTAAGGG TGGGACTTTC
CAATTTGATG AACTTTTTAC GGTGGAGATA CCCCGTCTTA TTGCCATGGT ACAGCGGGAG
GTTGGTCATG CCCGACTGGA TCAGACCAGT CGCACCTTAA TTCTTAGAAA TCGCCCATGG
AGCGAAGACA AGCAGCGCCT GCAAGAGGTC CGCGAGGCGT TGACCACCCT CATTTAG
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| Protein sequence | MTDPITIQKL LDKLDGRKSP LILPELTTGA SSWLAVELAL TQPAPVVLVT GKVQRAESIA
RELLFFGAQR GVHILPFPAW ETLPFEPLSP YGPLVGDRLA TLSRLIGLGK SGPISIGNEL
GDSRTVVITT PAAIMQRLMP KAVLARYGFA FSVGDQLNLP QFRELLTRSG YNPVSQVSEP
GEYAARGGLI DLFPPGRDEP VRVELFGDEV ESIRLFDPSN QRSLDPIPAV EVLPVREVIL
NADTISCFRT AYREVFGGYA AEDLIYKEIS QNRTYQGMEQ YLPLFYPDLD TLFDYLPKQT
LFLMEPDVPN QIEERAREIE DQHRIAYQAG QGNEKGYDGS SMRCIARNTL YLDQRELTER
LKPYPQLLQS ATGKPALDLD LHPIPPIQEG VQGADHSQQD EKKATATVMD RLCRQISLWQ
KEQRRIGFVS RTIGQRERMR ELLTDHKVSV VDGSSWSALL QADPRQPMLL LGDVSDGFEH
PTRHVVLISE DNVFGVRIRR RQISRRYLDQ LIASFADLNE GDAVVHVDHG VGRFGGLVSL
EVGQLKNDFL LIIYADGDKL YVPVENLDRV GKHSSGEEVQ LDKLGGKRWA KTRAKARKKI
LEMAEELVAI QAQREATQGV VYSGPDALYQ EFASTFPFEE TVDQAKAIEA VLEDMASPKA
MDRLVCGDVG FGKTEVALRA TFRAAMDGKQ VAILVPTTIL AQQHYENFAK RLAGYPIKVD
ILSRFRTPKE QKATIEAVGH GTIDVIVGTH RLLQTDVKFK DLGLLVVDEE QRFGVSHKER
IKNLRATLDI LTLTATPIPR TLNMAMAGVR DISIIASPPA DRLAIRTIIT HYDKQQVREA
ILRELYRGGQ VFYVHNQVQD IERKAQEIAE LVPEARVGVA HGQMRENQLE KVMMEFYRQT
FNILVCTTIV ENGVDIPTAN TIIIDRADKF GLAQLHQLRG RVGRSKHRAY AYMLVPHLRR
LTKHAEKRLE ALESLGELGA GFMLATHDLE IRGAGNILGD EQSGQIKEVG FELYNQMLRE
AVVALQTARA QGRDLASTTP LGQAPVDEGP APVVPSINLH LSTYIPEEYV EDVHQRLTLY
KRIAELKTYE ELQEMRLELA DRFGPLPATV DHLLSVMEIK RLCVKLRIIK LDAGPKGGTF
QFDELFTVEI PRLIAMVQRE VGHARLDQTS RTLILRNRPW SEDKQRLQEV REALTTLI
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