Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_1099 |
Symbol | |
ID | 4482236 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 1377362 |
End bp | 1380307 |
Gene Length | 2946 bp |
Protein Length | 981 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639721848 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_865023 |
Protein GI | 117924406 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.092428 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTTCGT GGAAATGGGT TGTGGCAACC ATCTTGGCAC TGACGGTGTT GGTCAGTCTG TTGGTTGCGA GCCATTATTA CTATCTGGAG CAGAGCAATC GCGATGCGTT GAGCCAGCGG GCGGGTTCGA CGGTGCAACT CTTATCCATA GCGGCTCACC GTGCGGTGTT GTCGGAGGAT CTGAATACCC TAAAAGATCT CGCACGACAG GCTTTTAAAC AGCCGGATGT CAGTTACTTT ACCATCCAGG ATGCGGATGG ACATTTTTTG CTGTTTCAGG GGCGTGATGG GATCACCCAG GAAAACTATA AAAAGCGTGC GGACATGGCC CACGCCGTCG CCATTATTAA AGAGAGCGGC TATATTTTTG CGATGGTCGA GTTGGGTCTT TCTCGTGCCC AGATGCAGCA GGTGGTCAAC CGTGCCATGC TGTGGAGCTG GAGTGTCGGG GGGGGGCTGT GGCTATTGGG CTGCTGTGCC ATTTTAGTGG TTGGTTGGCG GTTGGGTCGG GGGGAGTTGC GCTATCATGG GCTGTTTGCC AATCACACCG CCATTAAACT GCTGGTGGAC CCTCAAAATG ATTACCGAAT CATTGATGCC AACGGGGCGG CAGAGCAATT TTACGGGTAT AGTCGGCAGC AGCTCTGCGG TTTAAAAATA AGCCAAATCA ATGTGCTGTC AGAGCTGGAA ATTGTTCATG AAATGGCAAA TGCCAGCCGG GAGGGGCGCG ACTATTTTTT CTTTCGCCAC CGGTTGGCCA ACGGTGAAGA GCGTGAGGTG GAGGTGCACT CTGGCCCAGT ATTGCTGGAT GGCCGCACCA TTCTTTACCA AATCGTACAT GATGTAACCC AGCGGCGGCG CACAGAGCAG GAGCTGGAGC GGAGTCGTAC GGAGCTGGAA CTGGCTAATC GGCGTTTACA TACGGTGTTG GACGGGCTGG AAGCCACGGT CTTTGTGGCA GACAGTCGCA CCTTGCAGGT GCTCTATGTT AACCATGCCA TGTGGGGTCT GGTGGGGGAT GTGGTGGGGC AGAGTGTGAC CCGGTTGTTT AGTCGCGGTG GAGAAGCGGC CCCCGTTGAA TTTTGGCAGC CCCAACAGCT TTGGCCCAAG TTGGGGGAGC ATGCTACCCG CGAATATCAA CACCCCCTGG ATGGTAAGTG GTATCTGGCC CATATTCATG GTGTTGAGTG GTGCGATGGA CGGCTGGTGC GTCTGGAAAT TGCCACCGAT ATTAGTCGTC TTAAAGAGTC CCAGCGGGCC ATCCACCAAG CGATGGAGTT GGCCGAGGCA TCCGATCAAG CCAAGGGTGT GTTGTTGGAG ACGGTTAGTC ATGCCTTTGT GCAGCCACTG CAACAGATTG TGCAGCTGTT GTCGGTCATT CGTGAAGATC CCCTCCTAAA CCAACAGGGA CACCGGGTGG TTGCCATGGA GCGGGTGGTC GCGCAGCTCA ATGCGCGCAT TCAGGATCTA CACGCGCTCA GTCAATTACA GGGACAAAGT GCTGCGGGAT TGGAGCGTGT GCCGTTTCGT TTTGGGCCGC TGCTCGAGCG GTTGCGAGGC TACGATTCTA TGGTGGCTCT TGCAGAGAGG GGAGCACAGG TTGTTTTGGA TTTGGATGAT GCCGCCGCCG ATCAGCGCTT TATGGGCGAC CCTGGCCGCT ATCTTCAGTT GTTGAGTGCT CTGTTACGGA TCTACACCCT GGGGGATCCT AGCGGGCGTA TTGTGCTACG GTTGCTCATT GCCCAAATGG AGGGGTTGGA GACGACTGTG CATTTGGAGG TTTTGCCAGA GCAGCAGGGT GTAACCAAAA AGTCGATGCT TTACAGACCT TTATTGCTCA ATCCTCACGT TGTTGAGGGG GGTGAGCTGG CGTTGTTGTT GGTGGTGCGG TTGGCCGAGT GGTTGGGTGT TTCTGTGGAT ATTGCCCACG AGGGGGAGGG CTTGCCCGCT TTTCGGTTGC GGTTTCGATT GACGGTCGTG GAGCACGCCT CCTACCCTGA AAGCGTGGAT GGGCCGCACC TTGTAAATGT TGCCACCACC TTCGTAGCGA GCGCTTTGCC TGAATATCCC GCAATGGGTG AGTTGCCCGC TGGGGTGGGT CATGCAGAGG TGATCAGCCA TCTTGGGGTT GGCCATGGAG GGGGGCTTTA CCAAAGGCCC TTAAAGCTGT TGCTGATTGA GGATGATCTG CCCAATCAAC TCTCTATGCG TAAGCAATTG GAGGATCGTG GGCACCACGT GTTTCTCGCA CAGACCGGGC CGGAGGGGCT GGCTTTGGCT CAAGTTGAAA CATGGGATTT CGTGTTGGTG GCGCATCCCG TGGCTGGTAT GAGCGGGCTG GAAGTGGTGC AGCAGTTGCG CCAAGCAGAG GGTGAGCAGG ATGCAGAGTC GGTGCCTGTG GTGGTCATGT TGGTAGAGGT AACACGCCAA ATGGTCGAGG CGTCTCATCA GGCCGGTGGA GACGAGGTGT TGGCAAAGCC CGTTAACACG GAACGGTTAA CCGCCTTGAT CCGGCGTTTT ACAGGGACAA AAGAGCAGGC GCCAGAGATA TCCGACCCTA TGCAGGAACT TGAGATGACA CAACAGCTAA ATTATGCGCA TTTGGATAAT CTGTTGGCGG AGATGTCTCT TGAGGCATTT CAGAAGCTTT CGAGCCGTTT TGAGCAAAAT GCCCTGGGCT ATTTACAAAA AGCGGCGGAG GGGTTGCAAG CCAGGGATGA AACGGCGGTA CATGTGGCGT TGCACACTTT GGCGGGTTCT GCGGCAAGCT TTGGCTTGGC CGAGTTGGCG GAGCGCATGC GTCATGCCAG CCACCAAACG GTCGAAGCGG ATGGTGTTCG GTTAGAGAGT GAAATTTTAC AAGCGCGGGC GGAACTCTCT ATCGGTATGC AGGAACTAAG CGCTTATGTG GCGGCAAAAC TGGGTGACCA TGCAGAACCG CAATAA
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Protein sequence | MFSWKWVVAT ILALTVLVSL LVASHYYYLE QSNRDALSQR AGSTVQLLSI AAHRAVLSED LNTLKDLARQ AFKQPDVSYF TIQDADGHFL LFQGRDGITQ ENYKKRADMA HAVAIIKESG YIFAMVELGL SRAQMQQVVN RAMLWSWSVG GGLWLLGCCA ILVVGWRLGR GELRYHGLFA NHTAIKLLVD PQNDYRIIDA NGAAEQFYGY SRQQLCGLKI SQINVLSELE IVHEMANASR EGRDYFFFRH RLANGEEREV EVHSGPVLLD GRTILYQIVH DVTQRRRTEQ ELERSRTELE LANRRLHTVL DGLEATVFVA DSRTLQVLYV NHAMWGLVGD VVGQSVTRLF SRGGEAAPVE FWQPQQLWPK LGEHATREYQ HPLDGKWYLA HIHGVEWCDG RLVRLEIATD ISRLKESQRA IHQAMELAEA SDQAKGVLLE TVSHAFVQPL QQIVQLLSVI REDPLLNQQG HRVVAMERVV AQLNARIQDL HALSQLQGQS AAGLERVPFR FGPLLERLRG YDSMVALAER GAQVVLDLDD AAADQRFMGD PGRYLQLLSA LLRIYTLGDP SGRIVLRLLI AQMEGLETTV HLEVLPEQQG VTKKSMLYRP LLLNPHVVEG GELALLLVVR LAEWLGVSVD IAHEGEGLPA FRLRFRLTVV EHASYPESVD GPHLVNVATT FVASALPEYP AMGELPAGVG HAEVISHLGV GHGGGLYQRP LKLLLIEDDL PNQLSMRKQL EDRGHHVFLA QTGPEGLALA QVETWDFVLV AHPVAGMSGL EVVQQLRQAE GEQDAESVPV VVMLVEVTRQ MVEASHQAGG DEVLAKPVNT ERLTALIRRF TGTKEQAPEI SDPMQELEMT QQLNYAHLDN LLAEMSLEAF QKLSSRFEQN ALGYLQKAAE GLQARDETAV HVALHTLAGS AASFGLAELA ERMRHASHQT VEADGVRLES EILQARAELS IGMQELSAYV AAKLGDHAEP Q
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