| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0840 |
|---|
| Symbol | |
|---|
| ID | 4483420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1042271 |
|---|
| End bp | 1046353 |
|---|
| Gene Length | 4083 bp |
|---|
| Protein Length | 1360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639721588 |
|---|
| Product | DNA-directed RNA polymerase, beta subunit |
|---|
| Protein accession | YP_864765 |
|---|
| Protein GI | 117924148 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00386613 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTTA CCTTTACTGA GAAGAAGCGG CTACGGAAAA ACTTCGGGCG AATTTCCAGC
ATTATTGACA TCCCTAACCT GATTTCGGTG CAAAAAGAGT CGTTTGTGCG GTTCTTGCAA
ACCGGTACCG AATTTGAAAA GATGAAGGAC ACCGGCTTGC ACGGTGTGTT TTTATCGGTT
TTCCCCATCC ATGACTATGC AGGCACCGTA AGCCTAGAAT ATGTCAGCTA TGCCCTTGGC
GAACCCAAAT ATGATGTGGA TGAGTGCCTG CAACGAGGTA TGACATTTTC CGCACCATTA
AAGGTAGCCT TTCGTCTGGT TATCTGGGAC GAAAATGAAG AGACAGGCAC CAAAACCGTA
CGCGAAATCA AAGAACAAGA TGTCTATTTG GGCGAAATCC CACTGATGAC TAACACCGGT
ACCTTCATTA TCAATGGTAC CGAGCGGGTG ATCGTCTCCC AGATGCACCG TTCGCCGGGC
GTCTTTTTTG ATCATGATCG CGGTAAGACC CACAGCAGCG GCAAATTGCT CTTCTCAGCG
CGGGTTATTC CCTACCGTGG CTCCTGGCTT GATTTTGAGT TTGATCCCAA AGATCTGTTG
TTTGCTCGGA TTGACCGGCG CCGCAAGCTG CCGGTAACCA CCTTGCTGCG GGCCATGGGC
ATGAGTTCCG AGCAAATTCT TGAGCGCTTT TACGAAATTG AAACCTTTCG TAAAGAGGGT
GTGGTGTGGC AAAAGCGCAT GGTTCCCGAG CGTTTGATGG GCAACCGTTT GAACTATGCC
ATCGTTCACC CTGAGAGCGG TGAAGAGATT GTTAAAGCCA AAAAACGTGT CACCGCACGG
CATATCAAAA AATTTGAAGA GCTTGGTATG GATTGGCTGC CGGTCTCCCA GGAGGAGCTC
ATTGGTAGCT TTGTGGCGCG TAACATGAGT GACGTCATGG GTGAGGTGGT CATTGAGGCG
GGTGCCGAGA TCACTGAAGA GATGGTGCAG TATCTCGAAG ATGGTGGTAT CAAAGAGATT
GATGTGCTGT TCATTGATGG TATGAGTGTA GGGGCCTATC TGCGTAATAC CCTCGCACTG
GATAAAAACA GTGGCCAAGA TGAGGCTCTG ATTGATATCT ACCGTATGAT GCGGCCGGGT
GAACCACCCA CCGTTGATGC AGCAAAAGCG CTGTTTAATA ACCTGTTCTT CAATTCTGAC
CGCTATGATC TGTCAACGGT TGGTCGTTTG AAGATGAACA GTCGCTTGAG CCTTAATACC
GAGCTGCACA TCCGTACGTT GCAACATGAC GATATTTTGG GTGTTGTGGA CATTCTGCTC
AAGCTCAAAG ATGGTCATGG TAAGGTGGAT GACATCGACC ACTTGGGCAA CCGTCGTGTG
CGTAGCGTGG GTGAGCTGCT GGAAAACCAA GTGCGTATCG GTTTGGTGCG TATGGAGCGG
GCCATTCGCG AGCGCATGTC CTCCGCCGAA GCCGACCAGC TGGTGCCCCA TGATGTGATG
AACTCTAAGC CATTCTCTGC GGTTATCCGC GAGTTTTTTG GTTCTTCCCA GCTTTCGCAG
TTTATGGATC AGACCAACCC CCTTTCGGAA ATTACCCATA AGCGCCGCTT GTCCGCTTTG
GGCCCAGGGG GTATGACCCG TGAACGCGCG GGCTTTGAGG TGCGGGACGT GCACCCCACT
CACTATGGAC GGATCTGCCC CATTGAGACC CCAGAAGGTC CCAACATTGG TCTGATTAAC
TCGCTTTCAA CCTATGCGCG TATCAATGAA TTTGGTTTCA TTGAGTCACC TTACCGCCAG
GTAAAAGAGG GTACGCCCAT TGATCAGGTG GATTTTCTCT CTGCCATTGA TGAAGAGAAT
TACATCATCG CCCAGGCTAA CGCCAAATTG GGTGATGAAG CCTCCGAAGA AGATGCCTTG
ATTCAATGCC GGCATAAACT TGAGTTCATG GTGGCAACAC CAGACCGGGT TAACTACCAG
GACGTTTCGC CTAAACAGAC GGTTTCGGTC GCGGCTTCGT TGATTCCTTT CTTGGAAAAC
GATGACGCCA ACCGCGCCTT GATGGGCTCC AACATGCAAC GTCAGGCGGT GCCGCTCATC
AAAACCGATG CTCCCTTGGT GGGTACCGGT ATCGAGAGCG TGGTGGCCCG TGATTCGGGT
GTGACCATCA CGGCCCGTCG TACAGGCGTG GTGGACGAGG TGGATGCTGC GCGTATTGTG
GTCAAGGCCG ATGAAGAGCC CGGTTCCACA GAGCCTGGGG TGGATATCTA TAACCTGACC
AAGTTTTCAC GTTCTAACCA AAATACCTGT ATCAACCAGG TGCCATTGGT GAAAAACGGT
GAGCGGGTAA CGGCGGGGGA TATCATCGCG GATGGTCCCT CGACGCAGAT TGGTGAGTTG
GCGCTGGGGC GTAACGTGCT GGTGGCCTTT ATGCCCTGGA ACGGTTACAA CTTTGAAGAC
TCCATCTTGA TCTCAGAGCG TTTGGTGGCT GAGGATGTCT TTACCTCCAT TCACATTGAT
GAATTTGAGG TGATGGCACG GGATACCAAG TTGGGCGCTG AAGAGATTAC CCGTGATATG
CCCAACGTGG GGGAAGATGC CCTGCGCAAT CTGGACGAAT CGGGCATTAT CTATGTTGGG
GCAGAAGTTA AGCCCGGTGA CATTTTGGTG GGCAAAGTAA CCCCCAAGGG TGAAACTCAG
CTTACCCCAG AAGAGAAGTT GCTGCGCGCA ATCTTTGGTG AAAAGGCATC CGATGTACGG
GATACCTCCC TGCGTCTGCC TCCAGGGGTG GCCGGAACAG TGGTGGATGT ACGGGTCTTT
AGCCGCCGTG GGTTGGAAAA AGATGATCGT GCCAAGCTGA TTGATCAGGA TGAGATTGCT
CTGCTGCGTA AGGATATGGC CGCCGAGCGT CGTATTATCG AGCGGGATGC GGATGAGCGT
ATTCGCAATC TGATGAACGG CAAACCGGTG CGCAGCGCCC CTGGTCTACA GCCTGGGGAT
CATATCTCGC AATCTTGGTT GGATAAGAGT CCTAGCTCCC ATCTGCGGGA TGTGGTGTTG
GATGATGACG CCATTACCCA GCAGATTGAG GGGATCCGTC ACCATGTTGA AAAGGCAGCG
GATCGTCTGA AAAAGCGGTT TGAGAGCAAG GTTGAAAAGC TTGAGCGTGG GGATGATCTG
CCCCCAGGCG TGTTGAAAAT GGTCAAGGTC TATATCGCCG TTAAGCGTAA GCTCCAGCCT
GGTGATAAGA TGGCAGGCCG TCATGGGAAT AAGGGTGTTA TTTCTAAGAT TAATCCCTTG
GAAGATATGC CCTATATGGC CAACGGTACT CCTGTGGATA TCGTGCTTAA CCCCCTGGGT
GTGCCTTCAC GTATGAACGT GGGGCAGATT TTGGAAACCC ACTTGGGTTG GGCCGCTCGG
GGCATGGGCT TTAAAATTGA AGAGGCATTA AAGCAACACC GTAAGGGTGT GGCGGATGTA
TTGCGTCGTC AGTTTGAAGA GATCTATGAC AATACCCGCG AAAGCGCTGA AATCGCCGCC
CTGAGTGATG ATCAACTGGT GGATATGGCG AAAAATCTTC AGTACGGTGT GCCCACGGCA
ACACCTGTCT TTGATGGTGC CATTGAGTCG GATATCTCCA GTTGGCTGAA TAAGGCGGGC
CTGCCTACCT CGGGTCAGAT CCAACTGATT GATGGCCGTA CAGGTGAGCC TTTTGACCGT
CATGTCACGG TTGGCTACAT CTACATGCTG AAACTGCACC ACTTGGTTGA TGATAAAATC
CACGCGCGTT CCATTGGTCC CTACTCACTG GTTACGCAGC AGCCCTTGGG TGGTAAAGCC
CAATTTGGGG GTCAGCGCTT TGGTGAGATG GAAGTGTGGG CGCTGGAGGC CTATGGCGCG
GCTTATACCC TGCAAGAGAT GTTGACAGTA AAATCCGATG ATGTGGCGGG TCGTACCAAG
ATCTATGAGT CCATTGTCAA AGGGGATGAC ACTTTTGAGG CGGGCGTGCC CGAATCCTTT
AACGTGTTGG TGAAGGAGCT ACAGGCATTG GCGCTGGATG TAACCCTGCA ACGGGACGAC
TGA
|
|---|
| Protein sequence | MALTFTEKKR LRKNFGRISS IIDIPNLISV QKESFVRFLQ TGTEFEKMKD TGLHGVFLSV
FPIHDYAGTV SLEYVSYALG EPKYDVDECL QRGMTFSAPL KVAFRLVIWD ENEETGTKTV
REIKEQDVYL GEIPLMTNTG TFIINGTERV IVSQMHRSPG VFFDHDRGKT HSSGKLLFSA
RVIPYRGSWL DFEFDPKDLL FARIDRRRKL PVTTLLRAMG MSSEQILERF YEIETFRKEG
VVWQKRMVPE RLMGNRLNYA IVHPESGEEI VKAKKRVTAR HIKKFEELGM DWLPVSQEEL
IGSFVARNMS DVMGEVVIEA GAEITEEMVQ YLEDGGIKEI DVLFIDGMSV GAYLRNTLAL
DKNSGQDEAL IDIYRMMRPG EPPTVDAAKA LFNNLFFNSD RYDLSTVGRL KMNSRLSLNT
ELHIRTLQHD DILGVVDILL KLKDGHGKVD DIDHLGNRRV RSVGELLENQ VRIGLVRMER
AIRERMSSAE ADQLVPHDVM NSKPFSAVIR EFFGSSQLSQ FMDQTNPLSE ITHKRRLSAL
GPGGMTRERA GFEVRDVHPT HYGRICPIET PEGPNIGLIN SLSTYARINE FGFIESPYRQ
VKEGTPIDQV DFLSAIDEEN YIIAQANAKL GDEASEEDAL IQCRHKLEFM VATPDRVNYQ
DVSPKQTVSV AASLIPFLEN DDANRALMGS NMQRQAVPLI KTDAPLVGTG IESVVARDSG
VTITARRTGV VDEVDAARIV VKADEEPGST EPGVDIYNLT KFSRSNQNTC INQVPLVKNG
ERVTAGDIIA DGPSTQIGEL ALGRNVLVAF MPWNGYNFED SILISERLVA EDVFTSIHID
EFEVMARDTK LGAEEITRDM PNVGEDALRN LDESGIIYVG AEVKPGDILV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVR DTSLRLPPGV AGTVVDVRVF SRRGLEKDDR AKLIDQDEIA
LLRKDMAAER RIIERDADER IRNLMNGKPV RSAPGLQPGD HISQSWLDKS PSSHLRDVVL
DDDAITQQIE GIRHHVEKAA DRLKKRFESK VEKLERGDDL PPGVLKMVKV YIAVKRKLQP
GDKMAGRHGN KGVISKINPL EDMPYMANGT PVDIVLNPLG VPSRMNVGQI LETHLGWAAR
GMGFKIEEAL KQHRKGVADV LRRQFEEIYD NTRESAEIAA LSDDQLVDMA KNLQYGVPTA
TPVFDGAIES DISSWLNKAG LPTSGQIQLI DGRTGEPFDR HVTVGYIYML KLHHLVDDKI
HARSIGPYSL VTQQPLGGKA QFGGQRFGEM EVWALEAYGA AYTLQEMLTV KSDDVAGRTK
IYESIVKGDD TFEAGVPESF NVLVKELQAL ALDVTLQRDD
|
|---|
| |