| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0239 |
|---|
| Symbol | |
|---|
| ID | 4481688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 268300 |
|---|
| End bp | 268854 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639720985 |
|---|
| Product | chorismate lyase |
|---|
| Protein accession | YP_864172 |
|---|
| Protein GI | 117923555 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG3161] 4-hydroxybenzoate synthetase (chorismate lyase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACGC CAAGGTTCCA GTTGTTACAA GGGTGGCAAG AGGCCACCGC CCTCTCCCGA
GCTGAGGTGG CGGATGCCGA CCTGTGCGCC GCGCTTACCC ATACGGGCTC TTTGACCCGC
TTTTTAGAGG GGCGCTATGG GCACCCTGTG GATGTGACGG TGCGACAACA GGTCACCGCG
CCTTTGGCCA AAGCTCCCCT ATCTGCCCTT TGGGATAAAA CCCTCGCCTT ACAGGCGCAT
ACCCTATTGA TTCGCGATGC CTGGGTCAAC CATGCCGGTC CCATGTTGGT CTATGCCCAC
TCCCAAATTG ATTGGGACCA CTTGGATCAG GCGGAGCGGG TGGCCATTCG CAATGGACAG
ATTCCCCTGG GTGGGCTCTA TCTGGCCAAT GGCGCACAGG TCAACCGGGC CCATTTGCAG
ATCAGTCGGG TAACGGTGGC GGGGCTGGAG CGGGTGGGAG AAGCACCACT CTGGTGTCGG
CGCTCGCTGT TTACCGTGGA TGGCCGTCCC AATGCGCGCA TTTTAGAACT TTTTGTGCCG
GTTGATCATG GCTGA
|
|---|
| Protein sequence | MQTPRFQLLQ GWQEATALSR AEVADADLCA ALTHTGSLTR FLEGRYGHPV DVTVRQQVTA
PLAKAPLSAL WDKTLALQAH TLLIRDAWVN HAGPMLVYAH SQIDWDHLDQ AERVAIRNGQ
IPLGGLYLAN GAQVNRAHLQ ISRVTVAGLE RVGEAPLWCR RSLFTVDGRP NARILELFVP
VDHG
|
|---|
| |