| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0134 |
|---|
| Symbol | |
|---|
| ID | 4481023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 141254 |
|---|
| End bp | 144301 |
|---|
| Gene Length | 3048 bp |
|---|
| Protein Length | 1015 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639720879 |
|---|
| Product | HsdR family type I site-specific deoxyribonuclease |
|---|
| Protein accession | YP_864067 |
|---|
| Protein GI | 117923450 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.363012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGGAA TAGACTCAAT GACCGAACAA CAAATAGAAC AAGATTTTAT TACTAAGCTA
GGAGAGCTCA AATACAGCTT TCGCAAGGAT ATTCGTGATC GAGCCTCCCT TGAGAATAAT
TTTCGCGAGA AATTTAACGC GCTCAACCGT GTCCGTCTGA CCGATGCCGA GTTCACCCGG
CTGCGTGATG AGATCATCAC CGCCGATGTT TTCCAGGCCG CCAAAACCCT ACGCGAGTAT
GGCTATATCG AACGTGAAGA CGGCACCCCG CTGGACTACA TGTTGGTCAA CCTTAAGGAT
TGGTGCAAAA ACGAGTTCGA GGTCATCCAT CAGCTACGTA TTAACACCGA CAACAGTCAC
CACCGCTATG ACGTGATCCT GCTCATCAAC GGCCTGCCGC TGGTGCAAAT TGAGCTGAAG
AGCCTCGGCA TCAACCCACG CCGGGCTATG GAGCAGATTA TCGAGTACCG CAACGACTCC
GGCACCGGCT ACGCCAACAC GCTGCTCTGT TTTATGCAGC TTTTTATCGT CAGTAACCGC
GATGACACTT GGTACTTCAC CAACAACCAC AACCAGCACT TTGCCTTCAA CGCCGAAGAG
CGTTTTTTGC CCATCTACCA ATGGGCCGAT AAAGACAACC GCAAAGTGTG CCACCTAGAC
GACTTTGCTG AGAAATTTCT GGCCAAGTGT ACCCTGGGGC AGATGATCAG TCGCTACATG
GTGCTGGTCG TCAGCGAGCA GAAGCTGCTG ATCATGCGCC CCTACCAGAT CTATGCGGTC
CAGGCCATTG TCGACTGTAT CCACCAGAAC CGGGGCAACG GCTACATCTG GCACACCACC
GGCAGCGGGA AGACCCTTAC CTCCTTCAAG GCCTCTACCC TGCTCAAGGA CAACCTGGAC
ATCGAGAAAT GTCTCTTCGT GGTGGACCGC AAAGACCTGG ACCGCCAGAC CCGCATCGAA
TTCAACAGGT TTCAGGAAGG TTGCGTCGAG GAGAACACCA ACACCGAAAC CCTGGTGCGC
CGTCTGCTCT CGGAGGACTA CGCCCACAAG GTGATCGTCA CCACCATCCA GAAGCTCGGC
CTGGCCCTGG ATGAAACCGG CAATAAGGCT CAGCAATACA AGGAGAAGGG CAAGCCCACC
TTTAAGGAGC GGCTTGCTCC GCTACGCGAC CAGCGCATCA TCATCATCTT CGACGAATGC
CACCGCTCCC AGTTTGGCGA GAACCACAAG GCCATCAAGG AATTCTTCCC CAAGGCGCAA
CTGTTCGGCT TTACCGGCAC GCCCATCTTT GAGCAGAACG CCAGCTATAC CCAGGTCGAT
GGTGAACTTG CCTCCCACAA GACCACCGAG GAGATCTTTG AAAAACGTCT GCACGCCTAC
ACCATCACCC ACGCCATTGA TGACCGCAAC GTGCTGCGTT TTCACATCGA CTACTTTAAG
CCCGAGGCTG CATCACCCGC AGGCGATAAG GCCAAAGCTA ACACCACCAG TCTCACCCGG
CCCGAAACCC AGCGCCTCGT GGTGGATACC ATCCTGAAGA AGCACGACGC CGCCACCGAT
CACCGCCGCT TTAACGCCCT CCTGGCCACC GCCTCCATCA ACGACGCCAT TAATTATTAT
GAGCTGTTCA AGCAAGCCCA GGCCGAGCGC CGGGAGGAAG ACCCCGACTT CATCCCGCTT
CACATTGCCT GCGTCTTCTC GCCCCCGGCG GAGGGCAACA AGGATGTCAA ACAGCTACAA
GAAGACCTGC CCCAGGAGAA GGACGACAAC CAGCAGGAGC CGGAGCGGAA AAAGGCCGCG
CTGCAACAGA TCATTGCCGA CTACAACACC CAATATGGTA CCAACCATAA GCTTGGCGAG
TTTGATCTTT ACTATCAGGA TGTGCAACTG CGCATCAAGG ATCAGAAGTA CCCCAACAGC
GACTTCCTGC GCAAAAACAA GATCGACCTC ACCATTGTGG TGGATATGCT GCTCACCGGT
TTTGACGCCC AGTACCTCAA TACCCTGTAT GTGGACAAGA ACCTCAAGCA CCATGGTTTG
ATTCAAGCTC TCTCGCGCAC CAACCGGATG CTCAACGACA CCAAGCCCTA CGGCAATATT
CTCGATTTTC GCGCTCAGAA AGGGGCCGTT GACGAGGCCA TCGCCCTCTT CTCTGGTGAA
GATGTCACCC GCTCCCGTGA AATCTGGCTG GTGGACCCGG CCCCCAAGGT CATCGACAAG
CTCGATAGCG CCGTAAAGCG ATTGGAAGCG TTTATGCAGG CCCAGGGCCA GCCCTGCACC
CCCGCTGCGG TCAACGACCT CAAGGGCGAT GTCGCCCGTG CCGAGTTCAT TAACTGTTTC
AAGGAGGTGC AGCGCCTCAA GACCCAGCTT GACCAATACA CCGACCTGAG CGACGCGCAA
AAACAGCAGA TCGAGCAGTA CCTGCCAGCC GAGCAATTGC GTGGCTTTAA GGGCATGTAC
CTGGAGACCG CCCAGCGCCT CAAGGCGCAG CAGGGCAAGA GCGGCATAGA GGCCAGCGAA
GCCAAGGATG CCATCGAGCA GCTCGATTTT GAGTTTGTGC TCTTCTCCTC GGCCATGATC
GACTACGACT ACATCATGGG CTTGGTCTCC CGCTTTACCC AGCAGCTACC AGGCAAGCAG
AGCATGAGCC GCGACCAAAT CATCAACCTG CTCGCCACCA ACAGCAACCT GATGGCGGAG
CGCGAGGAGA TCACCGCCTA CATCAAAACC CTGGAAGAGG GCCAAGGGCG GAGTGTAGAG
GCCATTCGCG ATGGCTACCA GAGCTTCAAG GCGCACAAGG CCGAAGGGGA ACTGGCCGCG
CTGGCCCAAC GGCACGGGCT GGAACGCGAC GCCCTGCAAG GCTTGGTCGT GGGCATTCTG
GACCGCATGA TCTTCGATGG CGAGCAGCTA AACGACCTCT TCGCGCCGCT GGAACTGGGC
TGGAAGGATC GCAGCAAGGC CGAGCTGGCG TTGATGGAGG AGTTGGTCCC ATTGTTGAAG
AAACAGGCCG GCGGGCGGGA GATATCGGGG TTGGCGGCTT ATGAGTAA
|
|---|
| Protein sequence | MIGIDSMTEQ QIEQDFITKL GELKYSFRKD IRDRASLENN FREKFNALNR VRLTDAEFTR
LRDEIITADV FQAAKTLREY GYIEREDGTP LDYMLVNLKD WCKNEFEVIH QLRINTDNSH
HRYDVILLIN GLPLVQIELK SLGINPRRAM EQIIEYRNDS GTGYANTLLC FMQLFIVSNR
DDTWYFTNNH NQHFAFNAEE RFLPIYQWAD KDNRKVCHLD DFAEKFLAKC TLGQMISRYM
VLVVSEQKLL IMRPYQIYAV QAIVDCIHQN RGNGYIWHTT GSGKTLTSFK ASTLLKDNLD
IEKCLFVVDR KDLDRQTRIE FNRFQEGCVE ENTNTETLVR RLLSEDYAHK VIVTTIQKLG
LALDETGNKA QQYKEKGKPT FKERLAPLRD QRIIIIFDEC HRSQFGENHK AIKEFFPKAQ
LFGFTGTPIF EQNASYTQVD GELASHKTTE EIFEKRLHAY TITHAIDDRN VLRFHIDYFK
PEAASPAGDK AKANTTSLTR PETQRLVVDT ILKKHDAATD HRRFNALLAT ASINDAINYY
ELFKQAQAER REEDPDFIPL HIACVFSPPA EGNKDVKQLQ EDLPQEKDDN QQEPERKKAA
LQQIIADYNT QYGTNHKLGE FDLYYQDVQL RIKDQKYPNS DFLRKNKIDL TIVVDMLLTG
FDAQYLNTLY VDKNLKHHGL IQALSRTNRM LNDTKPYGNI LDFRAQKGAV DEAIALFSGE
DVTRSREIWL VDPAPKVIDK LDSAVKRLEA FMQAQGQPCT PAAVNDLKGD VARAEFINCF
KEVQRLKTQL DQYTDLSDAQ KQQIEQYLPA EQLRGFKGMY LETAQRLKAQ QGKSGIEASE
AKDAIEQLDF EFVLFSSAMI DYDYIMGLVS RFTQQLPGKQ SMSRDQIINL LATNSNLMAE
REEITAYIKT LEEGQGRSVE AIRDGYQSFK AHKAEGELAA LAQRHGLERD ALQGLVVGIL
DRMIFDGEQL NDLFAPLELG WKDRSKAELA LMEELVPLLK KQAGGREISG LAAYE
|
|---|
| |