Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MmarC7_1272 |
Symbol | truA |
ID | 5329206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanococcus maripaludis C7 |
Kingdom | Archaea |
Replicon accession | NC_009637 |
Strand | - |
Start bp | 1237163 |
End bp | 1237951 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 640793825 |
Product | tRNA pseudouridine synthase A |
Protein accession | YP_001330486 |
Protein GI | 150403192 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACATAT TTAAGATTGC ATACGATGGA AGATTAAGTT TTCAAACACA GCCTCACGGA GAAACCGTCT GTGACAAAAT TTCAAATGCA CTTTTAGACT GTGGATATTT AGATGACAAG GATAGGGTTC CGCTCTATCA CGGGGGAAGA ACTGATCGAG GAGTATCTGC ACTTGGAAAT TACATTGTTT ACGAAATGGA CAAAAAACCG GTGCTCCCAA GAGTTCAGTC TAATCTTAAA AAAGACGGAA TATGGGTTTT GGGATGTAAA GAGATCGATA CTTTTCCAGA AATAGAATAC AGGCACTATC AGTACAACTT ACCGAATAAA AATCACGATG TCGAACTAAT GAAAAAGGCA TCTGAAAAAC TTATCGGAAC ACACTATTTC CAGAATTTAT CAAAAAGGGA TAAAACAAAG GTAAAGGATC CAGTCAGGAC ACTTCACGAC ATTAAAATAT CATCAAATGA CTATTTCATT ACTATTGATA TTTTTGGGGA GAGTTTTCTT TGGAACATGG TTCGAAGAAT CATAAGACTC CTTTCCGATG TTGGAAAACA CAAATTTGAA GATCCTGAAA AATTTATCGA ATTAATCCTG TCAAAAGATT ACAACAAGGG TTACCCACCA TCCCCTGCCG AAGGTTTAAT ACTGGTCGAT GTCAAAACTA ATATTGACGT TGATATTGAT AGTTATGTCC TTAGAATGTT GAAAAATAGC TGGGAAAAAT CCCTGAATAA CAGTTTGATG AGACTTGGAC TCTGTAAAAC CGTTTTATCG AAAACTTAA
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Protein sequence | MYIFKIAYDG RLSFQTQPHG ETVCDKISNA LLDCGYLDDK DRVPLYHGGR TDRGVSALGN YIVYEMDKKP VLPRVQSNLK KDGIWVLGCK EIDTFPEIEY RHYQYNLPNK NHDVELMKKA SEKLIGTHYF QNLSKRDKTK VKDPVRTLHD IKISSNDYFI TIDIFGESFL WNMVRRIIRL LSDVGKHKFE DPEKFIELIL SKDYNKGYPP SPAEGLILVD VKTNIDVDID SYVLRMLKNS WEKSLNNSLM RLGLCKTVLS KT
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