| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC7_0121 |
|---|
| Symbol | |
|---|
| ID | 5328590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C7 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009637 |
|---|
| Strand | + |
|---|
| Start bp | 138929 |
|---|
| End bp | 140659 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 640792642 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001329342 |
|---|
| Protein GI | 150402048 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.416255 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATT ATAACAATGC AGTAGTTTTC TATGATGCAT GCGGAATCGA ATATTCAAAA
CAGATTAAAA AAACTCTTGA AAGGGGTTTT GAAAGAGAAT GTTTTTTAAT AAACCTTGAT
GCGCATGAAA ATACTCTTTC GAAGATTAAT TCGGCACTGA AAACGAGTAA ATATGTTATT
TTTATGTTTA GTTCGATTTA TTCTAACGAA CAGCTGTTAA GTGAAGCAAA AAATGCATTT
AATTCCGATA AACAGATAAT TTCTTTAAAA TTAAACGATC CGAGTTTAAA ACAACAGATT
TCAGTCCACC AATCTGAATT TACGGATAAC TACAGTCTTT CAAAAAAAGT AAGTGAAGAA
GTTGAAAAAC TTAAAAAAAT GGAAATTAGG GGTCCAGATT TTATAGAATC AATAATTTCA
TTTAATATGG GAAATATTTA CTTTAATTTT GGAAAATACG ACGAAGCTAT AAGATGCTAC
AAAAAAGCCG TGAAAATAAT ACCTGATTTC GTAGATGCAC TAAATAACTT TAATTCACTT
TCAAACCTGA GATTATCTGA AATTGAAGAT AAAAGGCCTG CCATATACAA GGATGCAAAA
ATTGATGAAA TCGTACCAGA TATTTTTTCA AATGCTGTTG AAGAACCCGA AGAAACTCAA
AAGTGCACAG AACTTGAACC AGAAGAGCTT GAAGACCTTA TTTTAGAAGG AGAAATTGGG
GCGGGGCCTG AACCAGAACT TGAAAAAGAA GTTGAAACGC CAGTTGAGGA AAATATAGAA
ACTGAGTTAG AAACGAATAT TGAAGATGAA ATGGTGGAAA TTGAAGAATT AAATAACGAA
AAAGAAGTAA TTTTTGAAGA AGAACCACAA GAAGACATTG AAATTGAATC TGATGACGTG
GACGATGAAC TTATTTCAGA TGCCGAAATT GAAGAATTTG GTATTGAAGA AAATTTTGAG
GAAATCGAAG AAGATATTCC TGAAACTGAA GAAATATCTG ATGAAACAGA AATAATTTTA
GAAGAAGAAA TTGAATCAGA AATTGACGAA GTTGTCGTAG AAATTTCTGA AGAAATAATT
GAAGACATTG AAATTTTGGA AGTTGTTGAT GAATCTGAAG ATATCGAAAA AATAATTGAC
GCAGATACCT CTGGTGAATT AGAGTCTTTT GAAGAACTAT TGGATAAAAA TGAAATCGAA
GAGGAAACAC AAGAATTAAT CCTTGGAGAT ATAACCGATA CAGGATTTGC TGAAGTTTTA
ACTTTTGCAA ACGCACTTTA TGAATCAGGA GATTTTAACG CTGCCGAAGT AGAATATAAA
AAAGCAATAA TCCTAAATCC TAATTATTCG GAAGCACATA ATAATTACGG ATGCCTTTTG
GAATATCTCG AAAGATTCGA TGAAGCAGAA GTTGAATTTA AAAAAGCAAT AGAATTGAAT
GTTTTAAACA TAAGGGCGCA TAATAACCTT GCAACGCTTT TAGCAAAAGC TGAAAAATAC
GAAGAAGCAG AAATGCACTA TAAAAAAGCA ATTGAACTAG ATCCTGAGTA TTGGGGCGCA
ATTTATAATT TAGGGGCAAT GTATGCAACC TTAAAAAGAT ATGATGATGC AATATCTCAA
GTTAAATCAA TGATTAAAAT CTTCAGGTCT GAAGGAAATA TTAAAGAAGT TTTAGAGCTT
AAAAAACTTG TAAAACATTT AAAAAAGTTA AAAATCCAAA ATGGTAAATA A
|
|---|
| Protein sequence | MADYNNAVVF YDACGIEYSK QIKKTLERGF ERECFLINLD AHENTLSKIN SALKTSKYVI
FMFSSIYSNE QLLSEAKNAF NSDKQIISLK LNDPSLKQQI SVHQSEFTDN YSLSKKVSEE
VEKLKKMEIR GPDFIESIIS FNMGNIYFNF GKYDEAIRCY KKAVKIIPDF VDALNNFNSL
SNLRLSEIED KRPAIYKDAK IDEIVPDIFS NAVEEPEETQ KCTELEPEEL EDLILEGEIG
AGPEPELEKE VETPVEENIE TELETNIEDE MVEIEELNNE KEVIFEEEPQ EDIEIESDDV
DDELISDAEI EEFGIEENFE EIEEDIPETE EISDETEIIL EEEIESEIDE VVVEISEEII
EDIEILEVVD ESEDIEKIID ADTSGELESF EELLDKNEIE EETQELILGD ITDTGFAEVL
TFANALYESG DFNAAEVEYK KAIILNPNYS EAHNNYGCLL EYLERFDEAE VEFKKAIELN
VLNIRAHNNL ATLLAKAEKY EEAEMHYKKA IELDPEYWGA IYNLGAMYAT LKRYDDAISQ
VKSMIKIFRS EGNIKEVLEL KKLVKHLKKL KIQNGK
|
|---|
| |