| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_0629 |
|---|
| Symbol | |
|---|
| ID | 5738894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | - |
|---|
| Start bp | 579139 |
|---|
| End bp | 580593 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641283095 |
|---|
| Product | replication factor C large subunit |
|---|
| Protein accession | YP_001548678 |
|---|
| Protein GI | 159905016 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAGT GGGTTGAGAA ATACAGGCCA AAATCGTTAA ATGACGTTGC AGGACACAAT
AAAACCAAAG AAACCCTTAT CGAATGGATA GAATCATTTG TAAGTGGTCA AAAGCAAAAA
CCAATACTTT TAGCAGGACC TCCCGGTTCA GGAAAAACTA CCCTAGCATA TGCGATCGCA
AAAGACTATG CATATGACGT AATTGAACTT AATGCAAGTG ACAAGCGAAA TAAAGATGTA
ATTTCGCAAG TTGTGGGAAC TGCGGCAACT TCAAAATCGA TTACTGGAAG ACGAACTTTA
ATCGTTTTAG ATGAGGTTGA TGGTCTTTCT GGAAATGATG ACCGTGGAGG GGTAGCTGAA
ATAATAAAAG TTTTAAAAAC AGCTGAAAAC CCTGTAATTT TAACTGCAAA CGATGTATAC
AAGCCCGCTT TAATGACGCT TAGAAATAAT GTAAATTTGA TTAATGTTGG TTCAGTCCAC
ACAAACTCAA TTCCGCCAGT TTTGAGGAAA ATTGCACTAA AGGAAGGCTT TGAAATCGAT
GAAAAAGTAA TCAAGACGAT TGCAAGTCAT GCGGGTGGGG ATTTGCGGGC TGCAATAAAT
GATTTACAGT CTTTAGCAAC TGGCGGATCC CTTGAAGTTG AAGATGCAAA AGAACTTCCT
GATAGGGACA GTGAAAAGAG TATTTTTGAT GCAATGAGAA TAATAATGAA AACAACCCAC
TACGACATTG CAACAAGTGC TACAAGGGAC GTAAAAGAAG AACTTGGAAC TATTGAAGAA
TGGATTTCTG AAAATTTACC AAAGGAATAT TTAAAATACA AGGACCTTGC AAATGGATAC
GATTACCTCT CAAAATCAGA TGTATTCTTG GGAAGAGTCT TTAGACGGCA GTATTTTGGG
CTCTGGAGAT ATGCTTCAGC TTTGATGACT GCGGGAACTG CCCTTGCGAA AGAAGAAAAG
TATAGGGGAT TTACTAGATA TGCGCCACCT TCTATTTTTA CAAAACTCAG CAGGACTAAG
GGCACTAGAC AAAAAATGAA AGATATTTTG AAAAAAATAG CTTTAAAAAC ACACACTTCA
ACAAAACGGG CAAGAAATAC TTTGGATTAC ATGGTTGTGA TTTTTGAATC AAATCCGGAA
GTTTCTGCAG AACTTGTGGA ATATTACGAA CTTACAAAAG AAGAAATGGA GTTTTTGACC
AATAAAACAA TTACAAAGAA TATATTTTCA GTAATTGCTG GGAAAAAGCC AAAAGTTGAA
AAGGAAATTC CAAAAAAGAA AAAAACTGAA GAAGTAATGC CGATTATTCC AAAACGGCCA
AAAATTTCAG AACTTCCAAA AGAACCTTTG AAAGAAGTAA TTGAAACTAT CGAAAAATCT
GTAGAAAACG CAGATACAAA AGAAAAAGAG AAAAAAGATC CAAAGAAACA GGCAACTTTG
GACAGTTTCT TTTAA
|
|---|
| Protein sequence | MEEWVEKYRP KSLNDVAGHN KTKETLIEWI ESFVSGQKQK PILLAGPPGS GKTTLAYAIA
KDYAYDVIEL NASDKRNKDV ISQVVGTAAT SKSITGRRTL IVLDEVDGLS GNDDRGGVAE
IIKVLKTAEN PVILTANDVY KPALMTLRNN VNLINVGSVH TNSIPPVLRK IALKEGFEID
EKVIKTIASH AGGDLRAAIN DLQSLATGGS LEVEDAKELP DRDSEKSIFD AMRIIMKTTH
YDIATSATRD VKEELGTIEE WISENLPKEY LKYKDLANGY DYLSKSDVFL GRVFRRQYFG
LWRYASALMT AGTALAKEEK YRGFTRYAPP SIFTKLSRTK GTRQKMKDIL KKIALKTHTS
TKRARNTLDY MVVIFESNPE VSAELVEYYE LTKEEMEFLT NKTITKNIFS VIAGKKPKVE
KEIPKKKKTE EVMPIIPKRP KISELPKEPL KEVIETIEKS VENADTKEKE KKDPKKQATL
DSFF
|
|---|
| |