Gene MmarC5_1197 details

Gene Information

• Locus tag: MmarC5_1197
• ID: 4928885
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C5
• Kingdom: Archaea
• Replicon accession: NC_009135
• Strand: -
• Start bp: 1142658
• End bp: 1143221
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640166688
• Product: DNA-directed RNA polymerase subunit E'
• Protein accession: YP_001097709
• Protein GI: 134046224
• COG category: [K] Transcription
• COG ID: [COG1095] DNA-directed RNA polymerase, subunit E'
• TIGRFAM ID: [TIGR00448] DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.824142
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTATAAAA TTTTAAAAAT TTCTGATACC GTGAGAATCC CCCCTAAAAT GTTTGGAAAC 
CCGTTAAGCG AAAACGTAAA AAGGGTTTTA ATGGAAAAAT ACGAAGGAAT TCTTGATAAG 
GACATCGGAT TTATCCTTTC AATCGTTGAT GTGGATGAAG TAAGTGACGG AAGCATCATT 
TATGGAGATG GTGCGGCATA CCACGAAACA GAATTTAATG TGCTTACCTA CGTTCCAGAA 
CTTCAGGAAG TAGTTGACGG AGAAATCGTT GACGTTGTTG AGTTTGGTGC ATTTGTAAGA 
CTTGGCCCCC TCGATGGTTT GATTCACATT TCACAAATCA TGGATGATTT CGTAAGCTTT 
GACCCAAAAA GAGAAGCAAT CATTGGAAAA GAAACAGGCA AAGTTTTAGA AAAAGGCGAC 
AAAGTAAGAG CTAGAATTGT TGCAGTCAGC TTAAGAGAAG AGAAGAAAAG AGGCAGCAAA 
ATAGCTTTAA CAATGAGACA GAACGGTCTT GGAAGACTCG AATGGCTCGA AGAGGAAAAT 
GAAACAGTAA GTGAAGAAAA TTAA 

 

Protein sequence

MYKILKISDT VRIPPKMFGN PLSENVKRVL MEKYEGILDK DIGFILSIVD VDEVSDGSII 
YGDGAAYHET EFNVLTYVPE LQEVVDGEIV DVVEFGAFVR LGPLDGLIHI SQIMDDFVSF 
DPKREAIIGK ETGKVLEKGD KVRARIVAVS LREEKKRGSK IALTMRQNGL GRLEWLEEEN 
ETVSEEN