| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0581 |
|---|
| Symbol | |
|---|
| ID | 4928941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | - |
|---|
| Start bp | 542224 |
|---|
| End bp | 545469 |
|---|
| Gene Length | 3246 bp |
|---|
| Protein Length | 1081 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640166085 |
|---|
| Product | carbamoyl-phosphate synthase large subunit |
|---|
| Protein accession | YP_001097110 |
|---|
| Protein GI | 134045624 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.600476 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAAGAG AGGATATAAA AAAGGTAATG ATTTTGGGTT CGGGCCCCAT TGTTATCGGA
CAAGCTGCGG AGTTTGACTT TTCTGGCTCT CAAGCTTGTA AATCTTTAAA GGAAGAGGGC
ATTTATACAA TTTTAGTAAA TTCAAACCCT GCAACCATTC AAACCGACAC AAACATTGCG
GACAAGGTTT ATTTGGAACC ATTGACCCCA AAAATATTGG AAAAAATTAT TGAAAAAGAA
CAGCCTGATG CAATTCTCCC AACAATGGGT GGTCAGACTG GTTTAAATCT TGCAATGGAA
CTTTCAAAAC GCGGAATCTT GGAAAAACAC GGTGTTGAAC TTTTGGGTTC AACAGAAAGC
GTAATTGAAA CTTCAGAAGA TAGAGATTTA TTCAATAAAG CAATGAAAGA AATTAACCAG
CCTATAGCAA AATCTGCAGC CGTTCACAGT GTTGAAGAAG CAATTGAAGC TACCAAAGAA
CTTGGATACC CTGCAATTGT AAGGCCCGCA TTCACCCTTG GAGGAACAGG CGGTGGAGTT
GCGAATAACG AAGAAGAATT AATCGAAATT ACGAAAAAAG GATTGAAATA CTCAATGATC
AAGCAAGTTT TAATTGATCA GAGTCTTTTA GGCTGGAAAG AATACGAATA CGAAGTAATG
AGGGATAAAA ACGATACCTG TATTGTGGTA TGTAACATGG AAAATATCGA TCCAATGGGA
ATACACACGG GTGAAAGTAT CGTAACTGCG CCTTCACAGA CCTTAAGCGA TGAATTCCAC
CAAAGATTAA GAGACGCTTC GTTACAAATC ATCAGACACT TGAAAATCGA AGGTGGCTGT
AACGTTCAGT TTGCAGTAAA CCCTGAAATG ACGGATTACG TAGTAATTGA AGTAAACCCT
AGAGTTTCAA GAAGTTCTGC ACTTGCAAGT AAAGCAACAG GATACCCTAT TGCAAAAATC
GCTGCAAAAA TTGCAATTGG AAGAACACTC GATGAAATAC AAAATGATGT TACAAAAGAA
ACACCTGCAA GTTTTGAACC GACGATCGAC TATGTTGTTG TAAAAATTCC AAGATGGCCG
TTTGATAAAT TCAGAACTGT TGGCAAAAAA CTTGGAACTT CCATGAAGTC CACTGGGGAA
ATCATGGCGA TTGGAAGGAA TCTTGAAGAA GCCCTTCAAA AAGCAGTTAG AAGTTTAGAT
ATTGGAAGAT TTGGAATAAT TGCAGACGGA AAAGACAAAG AATACTCAAA TTCTGAAATT
GTTGATATTT TAGAACATGC GACAGATGAA AGACTCTTTG TAATTGCTTA CGCACTCGAT
AAAGGGTGGA GTGTTGATGG AATTTGTGAA AGAACAGGAA TAAATCCATT CTTCATTGAA
AAAATCAAAA AAATTATCGA CTGTAAAAAA GAACTCGAAG TAATTTCAAG ACTTCCTGTA
GCTGACGAAA AATTAAAAGA AATCCTTTTA AAAGCAAAAT CATTGGGCTT TTCAGATGTT
CAAGTTTCAA AAATATTTTC AAAAACTGAA AATGAAATAA GAGACCTTAG AAAAAGACTC
GAAGTAATTC CAGTTTACAA GATGGTAGAC ACCTGTGCAG CGGAATTTGA AGCAAAAACG
CCATATTACT ACTCAGCATA CGAAAGATAC TTCGATGAAG AACAGAACGA AAGCATCTCT
TCAGATAGGA AAAAGGTAAT AATATTAGGT TCTGGACCAA TTAGAATCGG GCAAGGTGTT
GAATTTGATT ACTCGACAGT TCACGCAATT TTTGCATTAA AAGAACTTGG AATCGAAGCA
ATTATTGTAA ACAACAACCC TGAAACCGTA AGTACTGACT ACGATACTTC GGATAAACTA
TACTTCGAAC CATTAGTCTA CGAAGAAATA ATGAATATAA TTGAAAATGA AAATAAAAAC
GGACAGTTGC TTGGAGTTAT CGTTCAGTTT GGTGGACAGA CTGCGATTAA CCTTGCAATG
AAACTCTACA ATTCTGGAGT AAACATTTTA GGAACTTCCC CTCAATCAAT CGACCTTGCA
GAAGATAGGG ACCAGTTCAT ACACGTGCTT GAAAAATTAA AAATACCTCA AGCAGATGGT
GCAACTGCAG TTAGTGAAGA ACAGGCTCTT AAGGTTGTTG AAAAAATTGG ATACCCTGCA
CTTGTTAGAC CTTCATACGT GTTAGGGGGT CGTGCAATGC AGATCGTCTA CAACACAGAA
GATTTAAAAG ACTACATGAG AGAAGCAGTT AAAGTTTCAT CCGATCACCC GATATTAATT
GATAAATTCT TAGAAGAAGC TGTTGAAGTA GATGTTGATG CAGTGTGCGA TGGAGAAAGC
GTATTTATTG GCGCAATCAT GGAACACATT GAAGAAGCGG GAATTCACAG TGGAGACAGC
GCTTGTGTAA TTCCACCTCA AACGCTTTCA AAAGAAGTAA TCGAAAAAAT TGCGGAACAT
ACAACCAAAC TTGCTCTTGA ACTTGGAGTA ATTGGTTTGT TAAACATTCA GTACGCCGTA
AAAGACGGTG TTGTGTATAT TATTGAAGCA AACCCGAGAG CTTCAAGAAC CATCCCATAT
GTAAGTAAAT CAGTTGGTGT GCCACTTGCA AAAATTGCAA CAAATGCAAT AATGGGCAAA
AAATTAAAGG AAATGGGATA CTCGGGACTT GCAAAAGCAA AATATGTAAG CGTAAAAGAA
GCAGTATTTC CATTCTTAAA ACTTCCAGGA GTAGATCCTG TATTAAGCCC GGAAATGAAG
TCAACCGGTG AAGCAATTGG AATTGACCAG GACTTTGGAA AAGCGTTTTA CAAATCCCAG
CTTTCAGCAA ACATGGAACT TCCAACATCT GGAACTGTAT TTATCAGCGT AAGAAACAGG
GATAAAGACA ACATTACAAA AATCGCTAAA AAATACCATA ATTTAGGCTT TGAAATCGTT
GCTACAAGAG GAACTGCAAG AGAACTTCGG TTATTCGACA TTCCTGTAAG GGAAGTTAGA
AAAATCTCAG AAAGTATGCA AAACAGTGTT CTTGATTTAA TGCAGAAAGG AGAAGTTGAT
TTATTAATAA ACACTTCTTC GGGAGATAAA GCTAAAACTG ACGGATATTA TATCAGAAGG
GCTGCAGTAG AATTAAACAT TCCGTGTATG ACTACATTAC AAGGGGCGTA TGCTGCAATT
AAAGCTATTG AAGCAATTAA ATCTGGAGAA CTTGGAGTTT ATTCATTAAA TGAACTTGAA
AATTAA
|
|---|
| Protein sequence | MKREDIKKVM ILGSGPIVIG QAAEFDFSGS QACKSLKEEG IYTILVNSNP ATIQTDTNIA
DKVYLEPLTP KILEKIIEKE QPDAILPTMG GQTGLNLAME LSKRGILEKH GVELLGSTES
VIETSEDRDL FNKAMKEINQ PIAKSAAVHS VEEAIEATKE LGYPAIVRPA FTLGGTGGGV
ANNEEELIEI TKKGLKYSMI KQVLIDQSLL GWKEYEYEVM RDKNDTCIVV CNMENIDPMG
IHTGESIVTA PSQTLSDEFH QRLRDASLQI IRHLKIEGGC NVQFAVNPEM TDYVVIEVNP
RVSRSSALAS KATGYPIAKI AAKIAIGRTL DEIQNDVTKE TPASFEPTID YVVVKIPRWP
FDKFRTVGKK LGTSMKSTGE IMAIGRNLEE ALQKAVRSLD IGRFGIIADG KDKEYSNSEI
VDILEHATDE RLFVIAYALD KGWSVDGICE RTGINPFFIE KIKKIIDCKK ELEVISRLPV
ADEKLKEILL KAKSLGFSDV QVSKIFSKTE NEIRDLRKRL EVIPVYKMVD TCAAEFEAKT
PYYYSAYERY FDEEQNESIS SDRKKVIILG SGPIRIGQGV EFDYSTVHAI FALKELGIEA
IIVNNNPETV STDYDTSDKL YFEPLVYEEI MNIIENENKN GQLLGVIVQF GGQTAINLAM
KLYNSGVNIL GTSPQSIDLA EDRDQFIHVL EKLKIPQADG ATAVSEEQAL KVVEKIGYPA
LVRPSYVLGG RAMQIVYNTE DLKDYMREAV KVSSDHPILI DKFLEEAVEV DVDAVCDGES
VFIGAIMEHI EEAGIHSGDS ACVIPPQTLS KEVIEKIAEH TTKLALELGV IGLLNIQYAV
KDGVVYIIEA NPRASRTIPY VSKSVGVPLA KIATNAIMGK KLKEMGYSGL AKAKYVSVKE
AVFPFLKLPG VDPVLSPEMK STGEAIGIDQ DFGKAFYKSQ LSANMELPTS GTVFISVRNR
DKDNITKIAK KYHNLGFEIV ATRGTARELR LFDIPVREVR KISESMQNSV LDLMQKGEVD
LLINTSSGDK AKTDGYYIRR AAVELNIPCM TTLQGAYAAI KAIEAIKSGE LGVYSLNELE
N
|
|---|
| |