| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_1802 |
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| Symbol | rpoB |
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| ID | 4285383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Maricaulis maris MCS10 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008347 |
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| Strand | - |
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| Start bp | 1954982 |
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| End bp | 1959055 |
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| Gene Length | 4074 bp |
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| Protein Length | 1357 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638141291 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_757032 |
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| Protein GI | 114570352 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.817598 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.172687 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTCTGT CGTTCACCGG CAAAAAGCGG ATTCGCAAAT CTTTCGGACG TATTCCGGAA
ACCGTTGCGA TGCCGAATCT CATCGAAGTC CAGAAGAGCT CATACGAGCA CTTCCTGATG
AAAGAGGTGC CTGCCGCCGA GCGCGACGAC ACCGGCATGC AGGCGGTCTT CAAGTCCGTC
TTCCCGGTCA AGGATTTCGC CGAACGGGCT GTCCTCGACT TCGTGTCCTA CGAATTCGAG
CCCCCCAAGT TCGACGTTGA AGAGTGCCAG CAGCGCGACA TGACGTTCGC CGCGCCACTC
AAGGTCAAAA TGCGTCTCAT CGTGTTTGAT GTGGACGAGG AAACCGGCGC CCGTTCGGTC
AAGGACATCA AGGAGCAGGA CGTCTACATG GGCGATATCC CGCTCATGAC GGACAAGGGC
ACCTTCGTCG TCAACGGCAC CGAGCGCGTG ATCGTTTCCC AGATGCACCG TTCGCCGGGC
GTCTTCTTCG ATCATGACCG CGGCAAGACC CATGCCTCGG GCAAGTATCT GTTCGCCGCT
CGCATCATTC CTTACCGCGG CTCCTGGCTC GACTTCGAGT TTGATGCCAA GGACGTGGTC
CACATGCGCC TCGACCGCCG CCGCAAGCTG CCGGCGACGA CGCTGCTTTA TGCGCTGGGT
CTGGACAAGG AAGAGATCCT CTCGACCTTC TACGACACGG TCACCTACAA GGCGTCCAAG
AAGGGCTGGA CCGTTCCTTA CGTGAAGGAA CGCTGGCGTG GCGTGAAGCC TGCGCGTGAT
CTCGTTGATG CCAAGACGGG CGACATCATC GCGCCGGCTG GCAAGAAGAT CTCCGCCCGT
GCCGCCAACA AGTTTGCCGA TGACGGCCTG GCCGCTCTGC TGGTTTCCGA CGAGCACCTG
CTCGGCGGCT ATCTGGCCGA CGATATGGTC AATCTGGAAA CCGGTGAGAT CTTTGCCGAA
GCCGGCGACG AGATGAGCGA AGAGATTCTC GAGACGCTGA AGGATACCGG CGTCAAGGAA
CTCAACCTGC TCGACATCGA CCCGGCGACC GGCGTCGGTC CCTACATCCG TGCGACCCTG
GCTGCCGACA AGAATGACAG CCGTGAGCAG GCGTTGGTGG ACATCTATCG CGTCATGCGT
CCCGGTGAGC CGCCGACCCC GGAAACCGCT GAAGCGATGT TCCAGGGCCT GTTCTTCGAT
TCCGAGCGCT ATGACCTCTC GGCTGTCGGC CGGGTGAAAA TGAACATGCG CCTGGACCTC
GATGCTCCGG ACGACATGCG CACCCTGCGC AAGGAAGACA TCCTGGCAGT CCTCAAGACG
CTGGTCGGCC TGCGTGATGG TCGCGGCGAA ATCGACGACA TCGACAATCT CGGCAACCGC
CGTGTGCGTT CGGTCGGCGA GCTGATGGAA AACCAGTACC GCATCGGCCT GCTGCGCATG
GAACGTGCGA TCAAGGAGCG GATGTCTTCG GTCGATATCG AGACCGTGAT GCCGCACGAC
CTGGTCAACG CCAAGCCGGC TGCCGCTGCC GTGCGTGAAT TCTTCGGCTC CTCGCAGCTG
TCGCAATTCA TGGACCAGAC CAACCCGCTG TCGGAAGTCA CCCACAAGCG TCGTCTCTCG
GCGCTTGGCC CGGGTGGCCT GACCCGCGAG CGTGCCGGTT TTGAAGTTCG CGACGTGCAC
CCGACCCATT ACGGCCGGAT CTGCCCGATT GAGACACCGG AAGGCCCGAA TATCGGCCTG
ATCAACTCGC TGTCGACTTT CGCCCGCGTC AACAAGTACG GTTTCATCGA GAGCCCCTAC
CGCAAGGTCG AGAATGGCAA GCTGACCGAC CAGGTCGACT ACCTCTCCGC CATGCAGGAG
TCGCGCTACT CGATCGCCCA GGCGAACGCC CATGTCACCG AAAGCGGTGA GCTGGACAAT
GAGTTCGTCA ACTGCCGGGT TGCCGGTGAT GTGACGCTCG TGCCGCGCGA AGACGTGGAA
TATATCGACG TGTCGCCGAA ACAGGTTGTT TCGGTCGCCG CGGCGCTCAT TCCCTTCCTC
GAAAACGATG ACGCCAACCG CGCCCTGATG GGCTCGAACA TGCAACGCCA GGCCGTTCCG
CTCGTGAAGG CGGAAGCGCC GCTCGTCGGC ACCGGCATGG AAAGCATTGT GGCGCGCGAT
TCCGGTGCGG CGATTGCTGC CCGCCGGACC GGTGTGATCG AACAGGTCGA CGCGACCCGT
ATCGTTATCC GTGCAACGGA AGATCTTGAT GCCGCCAAGT CAGGCGTCGA CATCTACCGC
CTGTCCAAAT TCCAGCGGTC GAACCAGTCG ACCTGTATCA ACCAGCGCCC GATCGTGCGC
GTGGGTGACC AGGTCCATGC CGGTGACATC ATTGCAGATG GCCCGTCCAC CGATCTCGGC
GAGCTCGCGC TCGGCCGTAA TGTTGTCGTC GCCTTCATGC CGTGGAATGG CTACAACTTC
GAGGACTCGA TCCTGATTTC CGAGCGCATC GTGCGCGACG ACGTCTTCAC CTCGATCCAC
CTCGAAGAGT TCGAGATCGC GGCCCGCGAC ACCAAGCTGG GACCGGAAGA GATCACACGC
GATATTCCGA ATGTCGGCGA GGAAGCCCTG CGCAATCTCG ACGAAGCCGG TATTGTTGCG
GTTGGTGCTG AAGTCGCCGC TGGCGATATC CTGGTCGGCA AGGTCACACC GAAGGGCGAG
AGCCCGATGA CGCCGGAAGA AAAGCTTCTG CGCGCCATCT TCGGTGAGAA AGCCTCCGAC
GTTCGTGACA CCTCGCTTCG CATGCCGTCC GGTGCCACCG GCACGGTGGT CGAAGTCCGC
GTCTTCAACC GTCATGGTGT CGACAAGGAT GAGCGCGCGA TTTCCATCGA GCGTGAAGAG
ATCGAACGTC TCGGCAAGGA CCGGGATGAC GAGCTCGCCA TCCTCGAGCG CAACATCTAT
CAGCGTCTCG GCGATCTCCT GCTTGGCAAG ACGGCGGTCT CCGGCCCGCG CGGCTTTGCC
AAGGGCAAGG TTTCGCAGGA CGCGCTGGAC GAAACCCCGC GCAGCGGCTG GTGGCGTATC
GGCCTCGACG ACGAGAAGGC CATGGCCGAA GTCGAAGCCC TGCAAAAGCA GTATGACGAC
TCGAAGGCTC GCCTCGACCG TCGCTTTGAA GACAAGGTCG ACAAGCTCCA GCGCGGCGAT
GAAATGCCGC CGGGCGTGAT GAAGATGGTC AAGGTCTTCG TCGCCGTGAA GCGCAAGCTT
CAGCCGGGTG ACAAGATGGC CGGCCGTCAC GGCAACAAGG GTGTCATCTC CAAGATCAAC
CCGATCGAGG ACATGCCCTT CCTGGCCAAT GGCGAAGCGG TGGACATCGT CCTCAACCCG
CTCGGCGTGC CGTCGCGAAT GAATGTCGGT CAGATCCTGG AAACCCATCT GGGTTGGGCC
TGCCGCGGTC TCGGCAAACA GCTCGGCGAA GCCTATGACG CCTACAAGCG TGATGGCAGC
ACCGCGACGC TGAGATCCGA GCTGGACCGG GTCTATGAAG GAGATGAGCT TCCGGAAACG
GATAGCGATA TCGCCGAACT GGGCCTGAAC CTGTCCAATG GCGTGCCGAT CGCGACCCCG
GTCTTCGACG GTGCCCGTGA GCCCGATGTG GCGCATTGGC TGACCAAGGC GGGCTTCGAT
CCGTCCGGCC AGTCGACGCT CTATGACGGT CAGACCGGTG AACCCTTCCG TCGCAAGGTG
ACGGTCGGTG TGAAGCACCT GCTGAAACTG CACCACCTGG TGGATGACAA GATCCACGCC
CGTTCGATCG GACCGTACAG CCTTGTGACC CAGCAGCCGC TGGGTGGTAA GGCCCAGTTC
GGTGGTCAGC GCTTCGGTGA GATGGAAGTG TGGGCGCTTG AAGCTTACGG CGCGGCGTAC
ACGCTGCAGG AAATGCTGAC GGTGAAGTCG GATGACGTGG CCGGCCGGAC CAAGGTCTAT
GAGGCCATTG TCCGCGGTGA CGACACCTTC GAAGCCGGCG TTCCGGAAAG CTTCAACGTG
CTGGTCAAGG AAATGCGTTC TCTCGGCCTC AACGTCGAAC TGAAGAACGG CTAA
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| Protein sequence | MGLSFTGKKR IRKSFGRIPE TVAMPNLIEV QKSSYEHFLM KEVPAAERDD TGMQAVFKSV
FPVKDFAERA VLDFVSYEFE PPKFDVEECQ QRDMTFAAPL KVKMRLIVFD VDEETGARSV
KDIKEQDVYM GDIPLMTDKG TFVVNGTERV IVSQMHRSPG VFFDHDRGKT HASGKYLFAA
RIIPYRGSWL DFEFDAKDVV HMRLDRRRKL PATTLLYALG LDKEEILSTF YDTVTYKASK
KGWTVPYVKE RWRGVKPARD LVDAKTGDII APAGKKISAR AANKFADDGL AALLVSDEHL
LGGYLADDMV NLETGEIFAE AGDEMSEEIL ETLKDTGVKE LNLLDIDPAT GVGPYIRATL
AADKNDSREQ ALVDIYRVMR PGEPPTPETA EAMFQGLFFD SERYDLSAVG RVKMNMRLDL
DAPDDMRTLR KEDILAVLKT LVGLRDGRGE IDDIDNLGNR RVRSVGELME NQYRIGLLRM
ERAIKERMSS VDIETVMPHD LVNAKPAAAA VREFFGSSQL SQFMDQTNPL SEVTHKRRLS
ALGPGGLTRE RAGFEVRDVH PTHYGRICPI ETPEGPNIGL INSLSTFARV NKYGFIESPY
RKVENGKLTD QVDYLSAMQE SRYSIAQANA HVTESGELDN EFVNCRVAGD VTLVPREDVE
YIDVSPKQVV SVAAALIPFL ENDDANRALM GSNMQRQAVP LVKAEAPLVG TGMESIVARD
SGAAIAARRT GVIEQVDATR IVIRATEDLD AAKSGVDIYR LSKFQRSNQS TCINQRPIVR
VGDQVHAGDI IADGPSTDLG ELALGRNVVV AFMPWNGYNF EDSILISERI VRDDVFTSIH
LEEFEIAARD TKLGPEEITR DIPNVGEEAL RNLDEAGIVA VGAEVAAGDI LVGKVTPKGE
SPMTPEEKLL RAIFGEKASD VRDTSLRMPS GATGTVVEVR VFNRHGVDKD ERAISIEREE
IERLGKDRDD ELAILERNIY QRLGDLLLGK TAVSGPRGFA KGKVSQDALD ETPRSGWWRI
GLDDEKAMAE VEALQKQYDD SKARLDRRFE DKVDKLQRGD EMPPGVMKMV KVFVAVKRKL
QPGDKMAGRH GNKGVISKIN PIEDMPFLAN GEAVDIVLNP LGVPSRMNVG QILETHLGWA
CRGLGKQLGE AYDAYKRDGS TATLRSELDR VYEGDELPET DSDIAELGLN LSNGVPIATP
VFDGAREPDV AHWLTKAGFD PSGQSTLYDG QTGEPFRRKV TVGVKHLLKL HHLVDDKIHA
RSIGPYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVAGRTKVY
EAIVRGDDTF EAGVPESFNV LVKEMRSLGL NVELKNG
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