| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mjls_2315 |
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| Symbol | secD |
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| ID | 4878035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Mycobacterium sp. JLS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009077 |
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| Strand | + |
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| Start bp | 2416008 |
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| End bp | 2417804 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640139616 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001070592 |
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| Protein GI | 126434901 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.534551 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.509852 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCATCGT CTTCGGCGCC GGTACATCCT GCCCGCTATC TGTCGCTCTT CCTTGTGCTT
CTGGTCGGCG CCTTCCTCCT GGTCTTCCTG ACCGGTGACA AGAAGGCGGA CCCGAAGCTC
GGAATCGACC TGCAGGGCGG TACCCGCGTC ACCCTGACCG CGCGAACCCC GGACGGCTCC
CCGCCGAGCC GGGAATCGCT GGCCCAGGCC CAGCAGATCA TCAGCGCGCG TGTCGACGGG
CTGGGGGTGT CGGGTTCCGA GGTCGTCGTC GACGGCGACA ACCTGGTCAT CACCGTTCCC
GGCAACGACG GCAACGAGGC CCGCAACCTC GGCCAGACGG CGCGCCTCTA CATCCGGCCG
GTCGTGCACG CCATGCAGGC GCAGCCGGCC GCTGCGCGGG ACGGTCAACA ACCCGCCCAG
CCCGCTCAGC CAGGCCAACC CCAGCAGGCA CCCGGTCTGC CCGGCTTACC CGGACTGGTA
CCGCAGCAGC CCGGCCAGCC TGAGCAGGCG CCACCGCCCG CGGCGCCCCC CGCCGAGACG
CCACCGGCTC CGCAGCCCCG GCCCTACCCG CAGCAGCCGG CCCCGTCGCC GACCGAACCC
TCACCGGCAC CGGCACCGCC GGCCCCCGCC GGCCCGGCCA CACCCGCGCC GTCGCCCACC
CCGGGCCCGC CCAACAAGCG CGCGGACCTC GCGCAGCGCA TCGCCGACGA GAAGCAGCTG
CGCCAGAGCA CCGATCCGTC CATCCAGTTG CTGGCTCTGC AGTTCCAGGC CACCCGCTGC
GGTGAGGACG ACGTGCTCGC CGGCAACGAC GACCCCAACC TGCCGCTGAT CACCTGCTCG
ACCGACGGGC AGACGGTGTA CCTGCTGAAC AAGTCGATCA TCAGCGGTGA GCAGATCGCC
AACGCGTCCT CGGGCCTGGA CAACCAGCGC GGCGAGTACA TCGTCGACCT CGAGTTCAAG
AGCGACGCCG CGAAGATCTG GGCGGATTTC ACCGCCGCCA ACGTCGGCAC GCAGACCGCG
TTCACACTGG ACTCCCAGGT GGTCAGCGCC CCCGAGATCC AGGAAGCCAT CCCGGGTGGG
CGCACCCAGA TCAACGGCCG ATTCACCGCG GACTCGGCGC GTGAACTCGC CAACGTCCTC
AAGTACGGTT CGCTGCCGTT GTCGTTCGAA TCGTCCGAAG CCGAGACGGT GTCGGCGACA
CTCGGGCTGG CCTCGCTGAA GGCGGGGCTG ATCGCCGGTG CGGTCGGCCT GGCGGCGGTG
CTGCTGTACT CGCTGCTGTA CTACCGCTTG CTCGGCGTGC TGATCGCGCT GTCGCTGGTC
GCCTCCGGGG CGATGGTGTT CGCGATATTG GTGCTGCTCG GCCGGTACAT CAACTACACC
CTCGACCTGG CCGGGATCGC CGGTCTGATC ATCGGTATCG GTACCACCGC GGACTCCTTC
GTCGTGTTCT TCGAACGCAT CAAGGACGAG ATCCGCGAAG GGCGGTCGTT CCGGTCGGCG
GTCCCGCGCG GTTGGGCCAG AGCGCGGAAG ACGATCGTGT CCGGCAACGC GGTGACGTTC
CTCGCCGCGG CGGTGCTCTA CTTCCTGGCC GTCGGCCAGG TCAAGGGCTT CGCGTTCACG
CTCGGGCTGA CCACGATCCT CGACGTCGTC GTGGTGTTCC TGGTGACCTG GCCGCTGGTC
TACCTGGCCT CGAAGACGAC GTGGGCGGCC AAACCGAAGT TCAACGGCCT CGGCGCGGTC
CAGCAGATCG CGCGCGAACG ACGGGCGGCC GCACACGCGA CCGCGGGACG GGGATAG
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| Protein sequence | MASSSAPVHP ARYLSLFLVL LVGAFLLVFL TGDKKADPKL GIDLQGGTRV TLTARTPDGS
PPSRESLAQA QQIISARVDG LGVSGSEVVV DGDNLVITVP GNDGNEARNL GQTARLYIRP
VVHAMQAQPA AARDGQQPAQ PAQPGQPQQA PGLPGLPGLV PQQPGQPEQA PPPAAPPAET
PPAPQPRPYP QQPAPSPTEP SPAPAPPAPA GPATPAPSPT PGPPNKRADL AQRIADEKQL
RQSTDPSIQL LALQFQATRC GEDDVLAGND DPNLPLITCS TDGQTVYLLN KSIISGEQIA
NASSGLDNQR GEYIVDLEFK SDAAKIWADF TAANVGTQTA FTLDSQVVSA PEIQEAIPGG
RTQINGRFTA DSARELANVL KYGSLPLSFE SSEAETVSAT LGLASLKAGL IAGAVGLAAV
LLYSLLYYRL LGVLIALSLV ASGAMVFAIL VLLGRYINYT LDLAGIAGLI IGIGTTADSF
VVFFERIKDE IREGRSFRSA VPRGWARARK TIVSGNAVTF LAAAVLYFLA VGQVKGFAFT
LGLTTILDVV VVFLVTWPLV YLASKTTWAA KPKFNGLGAV QQIARERRAA AHATAGRG
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