Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mhun_0053 |
Symbol | |
ID | 3924867 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanospirillum hungatei JF-1 |
Kingdom | Archaea |
Replicon accession | NC_007796 |
Strand | + |
Start bp | 73164 |
End bp | 75125 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637895705 |
Product | DNA-directed RNA polymerase, subunit A'' |
Protein accession | YP_501550 |
Protein GI | 88601372 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02389] DNA-directed RNA polymerase, subunit A'' |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0449558 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGAGT TGATGATCCC CTCAGAAGCT GCAGCAGCAG TTCTCCGGTA CTTTGAAGAG CACAAAGTCA AGAAAAAATT CCCAGATGAT GTTCCGGAAC ATATTCGTGA AGTGCTCATC GAGATGGTTG AGTACCGGAT GAAGGAAGAG GATGAGGAGG CAGAAGATAC TATCGATGAC CAGATGTTTA TTGCCAAGAT GGAAGATCTC ATCCATGCAG AGAAATTCTA TGACTGGCTC GAAGAGAGTT TCTCTCCTCT CGTGGTATCA TCAGATGATG ATGAGTCGAT AATCCTCCCT CAGACCATCA TTACTCCCAC AGCCCGTCCG CGACTTACTA CACTGGATAA AAAATCAATG GAAGTCAGGG AGCACTTTTC TGACTACCAG ATGACTATTG AGAAGATTAA CTCCATCCCC GAGCGGATTG AGAAGATCCT TAAGGATAGA ATAAAGGATA TCAAACGCCA GGAAAACCCG AACTTCAGGC TTACTCAGAA ACAATACACG GTATTTCTGA CCAATCTTCT CAAAAAGGGC GATTTTGAAG ACTGGGTCAT GCAGACCTTT CCGCTTCCAG CTGACATGGA GCAGGAAGTC TTCACGGTCA GGAAGGCTGT TCCTGAAGAA GAGATTAAGA TTCCTGACTG GGTCGATGCA GCGGCATTTG AGGGCCTGAA CCGGTTTGAG CAGGATAAAT TCCGCGCTTT ACTCCGGGAT CACCTCTCTT CCCTGAATGA ACTTGTCGAA CACCCACAAG TTACCCAGCG GATGTCCAAA CGGTTCTTTG AGCTGATAGC CATAGGTCTT CCGCACCGGA CCAATACCAC TCTTGCCAAG ATTATCATCG GACGTGAGAT TGAGGGTCTG ACTGATCCCT CCCGGATTGT AACAGACGAG CAGTATGCCA AGATTCTCGC CCAGATGGTC AAGGAATATA AGCACACCAG GATAGAACCA TGTGAAGCGG TCGGAGTTGT TGCAGCCCAG TCTATCGGTG AGCCGGGTAC GCAGATGACG ATGCGTACTT TCCACTACGC GGGTGTGGCT GAAATTAACG TTACCTTAGG TCTTCCCCGT CTGATTGAGA TCATGGATGC CAGGAAGGAA CCATCCACCC CGACCATGAC CATCTATCTC CGTGAGGGGT ACTCAACTGA CCGTGATAAA GCGCGGCAGG TATCCTGGCA GATTGAGGCA GCTCCGCTTC AGGAGTTTGG AGATATAACC ACTGACATGG CAAATATGCA GATCGTGGTT CATGTCAACA AAGCGGTCTG TGAGAAACGG AAGATATCAG TCAGGGAGAT CCTTGAGACC GCTCCAAAGA AGATCAAGGA ACGAAGACAT TATCGTGATT TTGAGTTTGA GACGAATGAG TCTGAAGGGC TGCTCATCTT CATCCCCAAG GATCGGGGGA GTTATCAGAA CCTGTTCCAG CTCAAAGAAC ATGTCCGGAA TGTTATCGTT CAGGGTATTG ATGACATTGA ACGTGTAGTC GTCAGAAAGG AGTCCGGAGA ATACATTCTC TACACCGAAG GCTCCAACCT GAAAGATGTG TTTGCCATCC GTGGTGTTGA TACAACCAGG ACCAGGACGA ACAACATAAA CGAGATTTCA CAAGTTCTTG GTGTCGAAGC CGCCAGAAAT GCCATCATCA ACGAAGCACT TGCGACTCTC TCCGAACAGG GTATCATGGT CGATGTGCGC CACATCATGC TCGTTGCAGA TATGATGTGC ATGGAAGGTG AAGTAAAGCA AATCGGACGT CACGGTATTG CCGGAGAGAA GGAATCTGTT CTTTCCCGTG CAGCATTCGA AGTGACCGTG AATCATCTCC TGGATGCGGC AGTGGCCCAT GAAGCTGACA TCCTCTGTGG TGTGACTGAG AATGTCATTG TTGGTCAGCC AATTCAGCTT GGAACAGGGG ATGTTAAATT AGTAGTAAAG CAGAAAGTAT AG
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Protein sequence | MEELMIPSEA AAAVLRYFEE HKVKKKFPDD VPEHIREVLI EMVEYRMKEE DEEAEDTIDD QMFIAKMEDL IHAEKFYDWL EESFSPLVVS SDDDESIILP QTIITPTARP RLTTLDKKSM EVREHFSDYQ MTIEKINSIP ERIEKILKDR IKDIKRQENP NFRLTQKQYT VFLTNLLKKG DFEDWVMQTF PLPADMEQEV FTVRKAVPEE EIKIPDWVDA AAFEGLNRFE QDKFRALLRD HLSSLNELVE HPQVTQRMSK RFFELIAIGL PHRTNTTLAK IIIGREIEGL TDPSRIVTDE QYAKILAQMV KEYKHTRIEP CEAVGVVAAQ SIGEPGTQMT MRTFHYAGVA EINVTLGLPR LIEIMDARKE PSTPTMTIYL REGYSTDRDK ARQVSWQIEA APLQEFGDIT TDMANMQIVV HVNKAVCEKR KISVREILET APKKIKERRH YRDFEFETNE SEGLLIFIPK DRGSYQNLFQ LKEHVRNVIV QGIDDIERVV VRKESGEYIL YTEGSNLKDV FAIRGVDTTR TRTNNINEIS QVLGVEAARN AIINEALATL SEQGIMVDVR HIMLVADMMC MEGEVKQIGR HGIAGEKESV LSRAAFEVTV NHLLDAAVAH EADILCGVTE NVIVGQPIQL GTGDVKLVVK QKV
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