| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4050 |
|---|
| Symbol | |
|---|
| ID | 5833163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 4505907 |
|---|
| End bp | 4507466 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641369841 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_001641491 |
|---|
| Protein GI | 163853448 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.817302 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGGC TTCGATCCCA TCGGCGCATC GCGCCGGTCT GTGTCGCGCT CGGCGTCATC
TCGGGCTGTT CCGGCAGCGC GTTGGGCCAA GCCGTCACCC GTGCGCAGGT CGAGGCGCGT
TTGCCGGCCC TCGAAGCGCT GGCGCAGCAG GCCATCGATG CGGGCGACGT GCCGGGTCTC
GCGATCGCGA TCGTCTACGG CGACGAGACC CTCTTCCTGA AAGGCTTTGG CCGCAGGGAG
ATCGGAAAGC CCGACTTGGT CGGGCCGGAG ACGGTGTTTC AGATCGCCTC CCTGTCCAAG
CCCGTCACCT CGACCGTGGT GGCCGCCCTC GTGGGCGAGG GGGTCGTCGG CTGGGATGCG
CGCGTCGCCG ATCTCGACCC CGGCTTCCGG CTTCACGAGC CCTATCCGGC CTCGCAGGTC
ACGGTACGCG ATTTTCTCAA TCACCGCAGC GGGTTGCCCG GCAGCGCCGG GGACGACCTT
GAAGGGATCG GATACGGCCG CGACGACATC CTCCGCAGGT TGCGCCTCGT GCCGCCGTCC
TCCAGCTTTC GTGCGGGCTA CGCCTACAGC AATTTCGGGT TCACCGAGGG GGCCGTGGCC
GCCGCGAGGC CGACCGGCAA GCCGTGGGAT GTGGTGGCTC AAGAAAAGCT CTTCGGCCCG
CTGGGGATGA CCTCCACGAG CACGCGGCAT GACGACTTCC TGACGCGGGC CGACCGGGCC
GCACTCCATG TCAGGCGCGA CGGCGTCTGG ACGGCCGGGA CCGAACGCGA TCCCGACGCG
CAGGCGCCGG CCGGCGGCGT CAGCTCGAAT GTCCGCGACC TCGCCCGCTG GGTGCGGCTC
GAAATCGGAA ACGGCCTGTT CGAGCGCACG CAACGGGTTG CCGGCGCGGC CCTCGCTCAG
ACGCATGTGC CGCTCACCGC GCGCGGCACC AATCCCGTGA CCGGAGGCGC CTCCTTCTAC
GGCCTGGGCT GGAACATCGA GTACGGCCGC CACGGCCTCG TCTGGGGCCA TGCCGGCGCC
TTCAGCGTCG GCGCGCAGAC CCTCGTCTCG ATCCATGCGG AGGCGAAGCT CGGCATCGTC
CTGCTGACGA ACGCCTTCCC GTCAGGCGTT CCGGAGGGAT TGGCCGACAG CTTCGCGGAT
CTCGTCTTCG ACGGCCGGAT CCGCAAGGAT TGGCTGAAGG ATTGGGGCGA CGCCTACACG
AGCCTGTTCG GGCCGGGCGC GGCGGCGAAC CGCGCCGTCT ACGGCCGGCC GCCGGCGAAC
GCCTCGGCGT CGCTTCCCCT GGCGGCCTAT ACGGGGCGTT ACGCCAACGC GTATGTCGGC
AACGCCGAGG TGGCGGAGAT CGACGGTCGC CTGACCCTCA CGGTCGGGCC CGGCGGGGCG
CGGACCTATC CGCTGCGCCA CTTCGATCGC GATCTCTTCC TCTGCTTTCC CGATGCGGAG
GCGCCGGACA ACCCGTCGGC TATCCGGTTT GCCGTCGGAA GCGGGGGCAA GGCTGATGCG
GTGACGCTCG ACGCATTGAA TGCGAACGGT CTCGGCACCC TCGATCGGGC GAGCGAGTGA
|
|---|
| Protein sequence | MQRLRSHRRI APVCVALGVI SGCSGSALGQ AVTRAQVEAR LPALEALAQQ AIDAGDVPGL
AIAIVYGDET LFLKGFGRRE IGKPDLVGPE TVFQIASLSK PVTSTVVAAL VGEGVVGWDA
RVADLDPGFR LHEPYPASQV TVRDFLNHRS GLPGSAGDDL EGIGYGRDDI LRRLRLVPPS
SSFRAGYAYS NFGFTEGAVA AARPTGKPWD VVAQEKLFGP LGMTSTSTRH DDFLTRADRA
ALHVRRDGVW TAGTERDPDA QAPAGGVSSN VRDLARWVRL EIGNGLFERT QRVAGAALAQ
THVPLTARGT NPVTGGASFY GLGWNIEYGR HGLVWGHAGA FSVGAQTLVS IHAEAKLGIV
LLTNAFPSGV PEGLADSFAD LVFDGRIRKD WLKDWGDAYT SLFGPGAAAN RAVYGRPPAN
ASASLPLAAY TGRYANAYVG NAEVAEIDGR LTLTVGPGGA RTYPLRHFDR DLFLCFPDAE
APDNPSAIRF AVGSGGKADA VTLDALNANG LGTLDRASE
|
|---|
| |