| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3956 |
|---|
| Symbol | |
|---|
| ID | 5835641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 4393838 |
|---|
| End bp | 4395154 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641369747 |
|---|
| Product | C4-dicarboxylate transporter DctA |
|---|
| Protein accession | YP_001641398 |
|---|
| Protein GI | 163853355 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.205542 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCATG CCGCCACCCT GTCGACCGAG CGGGCGCCGC TCCACAAGTC CCTGTTCGTG
CAGGTGATCG CCGGGCTTCT GGCCGGCATC CTCGTCGGCG CTCTGGCGCC CGGCTTCGCC
GCAGAGCTGA AGATCCTGAG CGACGCCTTC CTCCGGCTGA TCGCGATGAT CGTGGCGCCG
ATCGTGTTCT GCGTCGTCGT GCACGGCATT GCCGGGGCGG GCGACCTCGG GAAGGTCGGG
CGGGTCGGCG TGAAGGCGCT GATCTATTTC GAGGTGATGA CGAGCCTGGC CCTCCTGCTC
GGGCTTGGGC TCGCCTACCT CGTCGGGCCG GGCCACGGCA TGAACATCGA TGTCGCAAGC
CTCGATGCCG GCGCCCTCGG CGGCTACGCC GATTCCGCGC AGAAGCTGCA GGGCGGCGGC
ATCGCGCATT TCCTCCTCGC CATCATCCCT AAGACCGCCT TCGACGCGTT CGCCCGCAAC
GACGTGCTGC AGGTCCTGTT CTTCGCCGTT CTGTTCGGGG TGAGCCTCGC CCTGGTCGGC
GGCGAGAAGG CCAGGGCGGT CTCGGGCCTG ATCGACGCTC TCTCCACGGT GCTGTTCAAG
GCCATGGGGC TGATCGTGCG GGTGGCCCCG CTCGGGGTGT TCGGCGCCGT CGCCTACACG
GTCGGACGCT ACGGCATCGG CTCGCTGGCG CAGCTCCTCT CGCTCGTGGC CCTGTTCTAC
CTCGCGGTGG CTTTGTTCGT GTTCGTGATC CTCGGCGCGG TGATGCGGCT CGCGGGCCTC
AGCCTCGTAA AGCTCCTGAT CTATCTGCGC GAGGAGCTGA CCATCGTGCT CGGCACCTCC
TCCTCCGACG CGGTGCTGCC GCAGATCATG CGCAAGCTCG TGCATCTCGG GGTGAAGGAT
TCCACCGTCG GCCTCGTGGT GCCCACGGGC TATTCCTTCA ACCTCGATGC CTTCTCGATC
TATCTGACGC TTGCCGTCGT CTTCATCGCG CAGGCGACCA ACACGCCGCT CTCCTTCAGC
GACCTGATGC TGGTGCTCGG CGTCTCGCTG GTCACCTCGA AGGGCGCCCA CGGCGTGCCC
GGCTCGGCCA TCGTGATCCT GGCCGCGACC CTGAACGCCG TCCCCTCGAT TCCCGCGATC
GGCCTCGTGC TGGTGCTCTC GGTCGATTGG TTCGTCGGCA TCGCCCGGTC GCTGGGCAAC
CTGATCGGCA ATTGCGTCGC CACCGTTGTC GTCGCCGCCT GGGAGGGCGA CCTCGACCGG
GAGCGTGCCG TGCGGGTGCT CGACGGCCGG GAGAGCCTGG AGCCCACCGC CGGTTAG
|
|---|
| Protein sequence | MSHAATLSTE RAPLHKSLFV QVIAGLLAGI LVGALAPGFA AELKILSDAF LRLIAMIVAP
IVFCVVVHGI AGAGDLGKVG RVGVKALIYF EVMTSLALLL GLGLAYLVGP GHGMNIDVAS
LDAGALGGYA DSAQKLQGGG IAHFLLAIIP KTAFDAFARN DVLQVLFFAV LFGVSLALVG
GEKARAVSGL IDALSTVLFK AMGLIVRVAP LGVFGAVAYT VGRYGIGSLA QLLSLVALFY
LAVALFVFVI LGAVMRLAGL SLVKLLIYLR EELTIVLGTS SSDAVLPQIM RKLVHLGVKD
STVGLVVPTG YSFNLDAFSI YLTLAVVFIA QATNTPLSFS DLMLVLGVSL VTSKGAHGVP
GSAIVILAAT LNAVPSIPAI GLVLVLSVDW FVGIARSLGN LIGNCVATVV VAAWEGDLDR
ERAVRVLDGR ESLEPTAG
|
|---|
| |