| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3465 |
|---|
| Symbol | |
|---|
| ID | 5832434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 3845457 |
|---|
| End bp | 3846353 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641369263 |
|---|
| Product | lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001640921 |
|---|
| Protein GI | 163852878 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.844818 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTTG TCCTCGCCGC CCTTCTTGCC GCCGCCCCGG CGTCGGCCTT CGCCCAGGAG
GCGGCACGGG ACAACATCGA TGCGCTGATC GCCGAGCAGG CCCGGGCCAA CAAGGTGCCC
GAGGCGTTCG TCCATCGCGT GGTCAAGCGG GAGAGCAACT ACAATGCCCG CGCCAAGGGC
GGCTCGGCGC TCGGCCTGAT GCAGATCAAG CACGCCACTG CCCGCGGCCT CGGCTATACC
GGCGATGCGG CCGGGCTCTA CAATCCCGAG ATCAACCTGA AATACGGCAT CGCCTATCTC
GCCGGCGCCT ACCGCGCCGC CAAGGGCGAC CTGGAGCAGG CCTACCGCTA CTACAATCGC
GGCTACTACT ACGCCGCCAA GCGCCTCGGC ATCGACGCCA CCCCGCCGGA TGACGCGGGC
ACGACGACCG TCGCCACCGC CACGCCGCCC GCCGGCGCGA ATGCCCGGTC CGCGAACGGC
TTCGACGGCA TGTTCGCCCT GCGCGGCAGC ACGCCCGCCG TGGGTGCCCA GCAGGCGCTG
GCCTACGCCG CGCCGGGCCC CGGCCCGACC GACGCCGTCG AGGTGCCGCT GCCGCCACGC
CGCCCGACCG CTCTCTCCGC CGAGCCCGTG CAGGTGGCGA GCCTCGCGCA GCCCAGCGCT
GCACAGCCGC AGGCCCCGAT CCCGGCGCAG GCCGCTCCCC AGCAAGCCGC CGCTCTGCAA
GCTGCTGCAG CGCCGACGAT GGCCGCCGCG GACGCCGTCG AGGTGCCGCT GCCGCCGCGC
CGCCCCTCCG AGACCGTGCT CGCGGCGATC CCGCGTCCGA CGATCGCCAT CGCGGCGCGC
AAGCCCGCCG AACCCGCCCC GATCCGGGAG GCCTCGGCCG CTCCGGTCAC GCCCTGA
|
|---|
| Protein sequence | MRLVLAALLA AAPASAFAQE AARDNIDALI AEQARANKVP EAFVHRVVKR ESNYNARAKG
GSALGLMQIK HATARGLGYT GDAAGLYNPE INLKYGIAYL AGAYRAAKGD LEQAYRYYNR
GYYYAAKRLG IDATPPDDAG TTTVATATPP AGANARSANG FDGMFALRGS TPAVGAQQAL
AYAAPGPGPT DAVEVPLPPR RPTALSAEPV QVASLAQPSA AQPQAPIPAQ AAPQQAAALQ
AAAAPTMAAA DAVEVPLPPR RPSETVLAAI PRPTIAIAAR KPAEPAPIRE ASAAPVTP
|
|---|
| |