| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2380 |
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| Symbol | |
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| ID | 5832035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | + |
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| Start bp | 2631314 |
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| End bp | 2633680 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641368179 |
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| Product | ribonuclease R |
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| Protein accession | YP_001639846 |
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| Protein GI | 163851803 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.736062 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCAGAC GCATCAATCC GACGGCGGGC ACCCCCGTTC TCCCCTCCCG CGAGCAGATC
CTCGCCTTCG TCGCCGAGAC GCCCGGAAAG GTCGGCAAGC GCGAAATCGC CAAGGCCTTC
GGCATCTCGG GCGCCGACAA GATCGGCCTC AAGGCGATCC TGAAGGAGAT CGAGGCCGAG
GGCGCGCTCG AGCGTGACCG CGGCGGCTTG CGGAAAAGCG GCAGCCTACC GCCGGTCGTG
CTCGCCGACA TCGTGTCGCG CGACCGCGAC GGTGACCTGA TCGCCCGCCC GGCGCAGTGG
GACGGGGAGG GCGAGGCGCC CAAGATCGCC GTCGAGACCC CGCGTGCCGG CCGCAAGGGC
AACCGCCCCG CCCCCGGCAT CGGTGATCGG GCGCTGGTCC GCGTCGCGCC GGACCCGGAA
GTGCCCGGCC GCTACACCGG CCGCGTCATC AAGGTGATCG GCAAGAACCG CTCCGAGGTG
ATCGGCGTCT ATCGCGCGGG CCGCGACGGC GGGCGCCTGC TTCCCGTCGA GAAGAAATCG
CAGGGTAAGG AGATCGCGAT CCCGCCGGGC GAGGAAGGTG AGGCCCGGGA TGGCGACCTC
GTCAGCGTCG CGGTGGAGCG CGAGACCCGC TTCGGCCTGC CCCGTGGGCG CGTCACCGAG
CGGCTCGGCG CGCTCGGCTC CGAGAAGGCG GTGAGCCTGA TCGCGCTGCA CATCCACAAC
ATCCCGCATG TCTTCCCCGC CGCCGTGCTG GCAGAGGCGG ATGCAGCCAA GCGCGCGACC
AAGCGCGGTC GCGAGGATTG GCGCGAGGCG CCGCTGGTCA CCATCGACCC GCCCGACGCC
AAGGACCACG ACGACGCGGT GATGGCTGAG GCCGATCCCG ATCCGGCCAA TGCGGGCGGC
TTCATCGTCA CCGTCGCGAT CGCGGATGTG GCCGCCTATA TCCGGCCGGA TTCGGCCCTC
GACCGCGAGG CGCTGCTGCG GGGCAATTCG GTCTACTTCC CCGACCGGGT GGTGCCGATG
CTGCCCGAGC GCATCTCGAA CGATCTCTGC TCGCTGCGCG AGGGCGAGGA CCGCCCGGCG
CTCGCCGTGC GGATGATCAT CGGCGCGGAC GGGGTGAAGC GCAGCCACAG CTTCCACCGC
ATCCTGATGC GCTCGCACGC CAAGCTCGCC TATGCGCAGG CGCAGGCCGC GATCGACGGC
CGGCCGGATG AGAAGTCGGG ACCGGTGCTG GAGACGGCGC TGCGCCCGCT CTACGCGGCC
TACGAGGCGA TGAAGCGGGC CCGCGACGCC CGCGGCCCGC TCGCCCTCGA CCTGCCGGAG
CGCAAGGTGC TGCTCGACGC GGAAGGCGGC GTCGATCGGG TGATCGTGCC GGAGCGTCTT
GAGGCGCATC GGCTGATCGA GGAGTTCATG ATCCAGGCCA ACGTCGCGGC GGCCGAGACG
CTGGAGAAGG CGGGCTCGCC GCTGATCTAC CGGGTCCACG ACGAACCGGC CCTGGAGAAG
ATGCGCGCGC TCGGCGAGGT GCTCGCCTCG GTCGGCGTCA AGATGACCAA GGCCGGTGCG
CTGAGGCCGG ACCTGTTCAA CCGCATCCTC GCCCAGGTGG CCGAGAGCGA GCACGCCCCA
TTCATCAACG AGGTGGTGCT GCGTTCGCAG GCACAGGCGA TCTACGCTGC ACAGAATTTA
GGCCATTTCG GCCTCAACCT GCGCCGCTAC GCCCACTTCA CCTCACCCAT CCGTCGCTAC
GCGGATCTCA TCGTCCACCG TGCTCTCGTG CGTGCCTGCG GATTGGGCAA GGACGGCCTG
CCGGACGACA CCACACCGGG TATGCTCGAC GCGGTCTCCG AGCAGATTTC GGCGGCCGAG
CGCCGGGCGA TGGCGGCCGA GCGCGAGACC ATCGACCGGC TCATCGCCGG CTATCTCGCC
GACCGCGTCG GCGCGACTTT CACCGGCCGG ATTTCCGGGG TGACGCGCTC GGGGCTGTTC
GTGAAGCTCG CCGAGACCGG GGCCGACGGG TTCGTGCCCG TCTCCACCAT CGGCCACGAA
TATTATCGCC ACGACGAGGC CCTGCATGCC CTCGTCGGCG ACCGCAGCGG CGAGACCTAC
CGCCTCGGCG ACACGGTCGA GGTCCGCCTC GTCGAGGCGG CGGCGGTGGC CGGCGCCTTG
CGTTTCGAGA TCCTGTCGGA GGGGCGCAGC CGCTCCGGCG CCAAAGGCGG TGGGATCAAG
CGCAGCGGGT CCAAGGCGAA TCCGGGCAAG GCGAAGTTGG GCAAGGCCAA GTTCGGTGCG
AAGCCACCGA AGGGCAAGAC GCGCCCCGGC AAGGCGGCGG CCTCCGAGAG CGATACGGCG
CGGCGCCATC GCGGCTCGCG TCGCTGA
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| Protein sequence | MARRINPTAG TPVLPSREQI LAFVAETPGK VGKREIAKAF GISGADKIGL KAILKEIEAE
GALERDRGGL RKSGSLPPVV LADIVSRDRD GDLIARPAQW DGEGEAPKIA VETPRAGRKG
NRPAPGIGDR ALVRVAPDPE VPGRYTGRVI KVIGKNRSEV IGVYRAGRDG GRLLPVEKKS
QGKEIAIPPG EEGEARDGDL VSVAVERETR FGLPRGRVTE RLGALGSEKA VSLIALHIHN
IPHVFPAAVL AEADAAKRAT KRGREDWREA PLVTIDPPDA KDHDDAVMAE ADPDPANAGG
FIVTVAIADV AAYIRPDSAL DREALLRGNS VYFPDRVVPM LPERISNDLC SLREGEDRPA
LAVRMIIGAD GVKRSHSFHR ILMRSHAKLA YAQAQAAIDG RPDEKSGPVL ETALRPLYAA
YEAMKRARDA RGPLALDLPE RKVLLDAEGG VDRVIVPERL EAHRLIEEFM IQANVAAAET
LEKAGSPLIY RVHDEPALEK MRALGEVLAS VGVKMTKAGA LRPDLFNRIL AQVAESEHAP
FINEVVLRSQ AQAIYAAQNL GHFGLNLRRY AHFTSPIRRY ADLIVHRALV RACGLGKDGL
PDDTTPGMLD AVSEQISAAE RRAMAAERET IDRLIAGYLA DRVGATFTGR ISGVTRSGLF
VKLAETGADG FVPVSTIGHE YYRHDEALHA LVGDRSGETY RLGDTVEVRL VEAAAVAGAL
RFEILSEGRS RSGAKGGGIK RSGSKANPGK AKLGKAKFGA KPPKGKTRPG KAAASESDTA
RRHRGSRR
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